BAC Information

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BAC

Clone NameMSMg01-423C06
Chromosome6 (Build37)
Map Location 20,158,894 - 20,159,414
singlet/doubletsinglet
Overlap genenone
Upstream geneEif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423C06.T7 (MSMg01no423_c06.b1)MSMg01-423C06.TJ (MSMg01no423_c06.g1)
ACCAG517366AG517367
length769728
length of high quality
(start - end)
100 (64 - 163)520 (65 - 584)
definitionCHROMAT_FILE: MSMg01no423_c06.b1 PHD_FILE: MSMg01no423_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:45 2005CHROMAT_FILE: MSMg01no423_c06.g1 PHD_FILE: MSMg01no423_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGATCCTATTTTCAAAAGGGGCGGAATCTCATTAATACT
TAAATCTTATGTCCAATTTTGTTTAGTTATAAACTTTGTTAACAGTATGT
TTGTTTGCGTGTTTGTTTTGTGTCTGTGTAAGTATATGTAGCAGGTGGAT
ATGTACATACAGCGATCAGATGGGAGGAGGATCAGATTCTCTAGACATGT
AACTGATTGTTTGCATCACCTAATATGTGTCATGTTTTATCAAATGCGGT
TCTTCTGGAAGAACAGCAACTTCGTCTACCCTTTGAGAAACCTCCTTAGG
TTTTTTTTTTCTCAAACCACACACATAGATTCAACACATATATTTTTTTC
TCTCTCCCACTCCCCCCTTATTTACACTATACATATTTATTTATTTTATC
TCTCCCTTTATTATTTATATTTTTTTCCATATCTTCCCCCTTCTTGACGA
TTCCTTGTTCCTTTTTCACCCTTTTCTTCCTTTTCCCCTCTTTCTGCCCC
ATATCATTTTATTTCCTTCTTCTCTTTTTTCTCCCCTTCAATTTTCTCTT
CCTTTCCTCTCCCTCTTTTCTCCTATCCCACTCCGCTTTTCTTTTTTTTA
CCGCCTTTCCCCCTTCTTCTTCCCCTATTACCCTTTATTTTATTTCCCCT
TTTACTTTACCTCCCTCTCCCTTTTCCCTCTTTTTTTTCTCCCCCCCCCC
CCCTCTTTTTCCTCCTTTCTTCACCCTTCTTTTTCCCCTTCTTACCTCCT
TTTCCCTTATTTATCCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTAAAAATATCAAAATTACCTTTTCACATATACTGA
ATAAGATGAACAATGTTTTGAGGAACAGTTGAAAATTGTTTTTAGTATAT
ATTTAAATATTTACCTCATTAGTGAAATGTTTTATTTAGTTTTCAGGTAA
CTATGGGTTATTATTTTCTATGGATATTTGAGTTAAACAAGAACGATTAA
TGCATTTATTGATTGATCTTCAGATATAATGTATTGATTAAGCAATATTA
GGCTACAACATGTTTATATACAAATTTTATGTAGAATGGGTACATTAAAC
TATTCAAATACATTCATTCTTATTTCAAAACAACAAAGTCACTTAGTAAA
ATCTATTCTTAACCATCTTGAGAACATAATTAATTTTCTTGACTACATCT
CAAAGAAGATAAATCGCCTCTATCATAAATATTGTCTTTTTTTTTCAAAT
TTAAAGTACTTTATTCTTACACATAAAAAGATAATCCAGGTTGTCTCAAT
GTCATTTACAGATGCATTAATCATGTTGTGAATGCGCCACAGAATGACGC
AAGGTAATATCTATTCTGCTTCTTACCACGTCAAAGATTTGTTTATGTCC
ATTTCATTGAAAGCCCCGTTTAAAGTTTGCTTCCTCCTATGTGAAATATG
CCTTATTGTACGACTTTTTAACTATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_c06.g1 MSMg01no423_c06.g1 CHROMAT_FILE:
MSMg01no423_c06.g1 PHD_FILE: MSMg01no423_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:45 2005
         (520 letters)



>mm_chr6_20158694_20159614
          Length = 921

 Score =  953 bits (493), Expect = 0.0
 Identities = 514/521 (98%), Gaps = 1/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaaatatcaaaattaccttttcacatatactgaataagatgaacaatgttttgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaatatcaaaattaccttttcacatatactgaataagatgaacaatgttttgagga 260

                                                                       
Query: 61  acagttgaaaattgtttttagtatatatttaaatatttacctcattagtgaaatgtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagttgaaaattgtttttagtatatatttaaatatttacctcattagtgaaatgtttta 320

                                                                       
Query: 121 tttagttttcaggtaactatgggttattattttctatggatatttgagttaaacaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagttttcaggtaactatgggttattattttctatggatatttgagttaaacaagaac 380

                                                                       
Query: 181 gattaatgcatttattgattgatcttcagatataatgtattgattaagcaatattaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattaatgcatttattgattgatcttcagatataatgtattgattaagcaatattaggct 440

                                                                       
Query: 241 acaacatgtttatatacaaattttatgtagaatgggtacattaaactattcaaatacatt 300
            ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaacatgtgaatatacaaattttatgtagaatgggtacattaaactattcaaatacatt 500

                                                                       
Query: 301 cattcttatttcaaaacaacaaagtcacttag-taaaatctattcttaaccatcttgaga 359
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 cattcttatttcaaaacaacgaagtcacttaggtaaaatctattcttaaccatcttgaga 560

                                                                       
Query: 360 acataattaattttcttgactacatctcaaagaagataaatcgcctctatcataaatatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acataattaattttcttgactacatctcaaagaagataaatcgcctctatcataaatatt 620

                                                                       
Query: 420 gtctttttttttcaaatttaaagtactttattcttacacataaaaagataatccaggttg 479
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 621 gtctttttttttcaaatttaaagtactttattcttacacagaaaaagataacccaggttg 680

                                                    
Query: 480 tctcaatgtcatttacagatgcattaatcatgttgtgaatg 520
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcaatgtcatttacagatgcattaatcatgttgtgaatg 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space:   464610
Effective search space used:   464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)