BAC Information

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BAC

Clone NameMSMg01-423G08
Chromosome6 (Build37)
Map Location 102,201,096 - 102,201,339
singlet/doubletsinglet
Overlap geneCntn3
Upstream genePdzrn3, EG666084, EG666123
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423G08.T7 (MSMg01no423_g08.b1)MSMg01-423G08.TJ (MSMg01no423_g08.g1)
ACCAG517562AG517563
length766750
length of high quality
(start - end)
244 (63 - 306)242 (65 - 306)
definitionCHROMAT_FILE: MSMg01no423_g08.b1 PHD_FILE: MSMg01no423_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:04 2005CHROMAT_FILE: MSMg01no423_g08.g1 PHD_FILE: MSMg01no423_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTGXXXXXXXXXXXXXXXXXXXTCTAAGAGGATCCGCGGAATTCTCTTT
TTTCTTTTATGCAGTCTTATTATAGTGATCTGCTCTGACATAGCTCAGGG
ATAGATAAAGGACAATAAGTCCTGTTTTCCAAATTATATTGAGTACTAGT
TGCTTTGGTGTTGTCCTAAAATACTATCAGATTAGGTTAGAAATGGATCA
CAAGGCTTTGCCTTCCGAACAAATTTTCAACAACTTATCGCCTATCATAC
AACTTACAAAGAACAGGCATTTAATATGTACAATTTCAAGAAACATGTTT
CCTCAACTATCATCATTATGTTCACACATAATTTTAATATAAAGGAGGCA
CAGCTTAATCAAACATCAAGTGTGCTCTAATGATTATGTACCCTTCTATT
AAATTCCCGTCCGATAGAAGCATTTTGCCCCTCCATGTCAGCTCCAAGGC
CATCATCTTCTATAGATATTTATCACTATTTATCTGTTGCACCTTATATC
TTACTCTGTATTCTTTAACATTCTTAATTGTTTAAAGCTCCCTTTACCAC
TTCCTTTCATTTCCCTTTTTTCCCTCGCCACACCTATATTTTTTTTTTTC
CCCACTCCCCCCTCCTCTCCCCCTTTTTCCCTTTGTTTTTTCTCCCCTTA
TCCTTTTCCTCTTCTTCCTTTCCCCCCTTTTTTTTTTTCCCCCCCCCTCC
CATTTTTTATTTTTTTTTCTCCCCTTTTTTCCCCCCTTTTCACTCTTTTC
CCTTTTTTACCCCCTN
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTGTTTCTCCATCTAAGGGTATTGTAAGTTTGGC
TGAGTATAGTATCCTGGGTTGGCATTTGTGTTCTCTTAGTGTCTGTATAA
CATCTGTCCAAGCTCTTCGTGCTTTCATAGTCTCTGGTGAAAAGTCTGGT
GTAATTCTGATAGGCTTGCCTTTATATGTTACTTGACCCTTTTCCCTTAC
TGCTTTTAACATTCTATCTTTATTTAGTGCATTTGTTGTTCTGATTATTA
TGTGTCTTTTTTTTTTTCTTTTCTGATCCAGTCTATTTGGAGTTCTGTAT
GCTTCTTTTATGTTCATGGGCATCTCTTTCTTTAAGTTTTGGAATTTTTC
TTCTATAATTTTGTTGAAGATATTTGCCGTTCCTTTGAGTTGAAAATCTT
CATTCCCATTCACTCCTATTATCCGTAGGCTTGTTCTTCTCCTTGTTGTC
TGTATTTTCCGCATGTTTTGAGTCACTACTTATCTGCGTTCCGTTCTCCC
TTTCCCTGTTTTTTCTTCCTCTCTCCTCCTTTCTCTTTTTTTTTTTTACC
CCCTCCTTCTTTTTCTTCCCCTTTTTTTTTCTAATGCCTCCCACCTTCCT
TTTTTATTCTTGCTTTCTCCCCTATTTTTCTTTACTCTTCATTTTTATCT
TTCCCACACTATTCTCCCCTCTTACTTTTCACCTTTTTCCTTTTCTTTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_g08.b1 MSMg01no423_g08.b1 CHROMAT_FILE:
MSMg01no423_g08.b1 PHD_FILE: MSMg01no423_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:04 2005
         (244 letters)



>mm_chr6_102200896_102201539
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcttattatagtgatctgctctgacatagctcagggatagataaaggacaataagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttattatagtgatctgctctgacatagctcagggatagataaaggacaataagtcc 260

                                                                       
Query: 61  tgttttccaaattatattgagtactagttgctttggtgttgtcctaaaatactatcagat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgttttccaaattatattgagtactagttgctttggtgttgtcctaaaatacaatcagat 320

                                                                       
Query: 121 taggttagaaatggatcacaaggctttgccttccgaacaaattttcaacaacttatcgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggttagaaatggatcacaaggctttgccttccgaacaaattttcaacaacttatcgcc 380

                                                                       
Query: 181 tatcatacaacttacaaagaacaggcatttaatatgtacaatttcaagaaacatgtttcc 240
            | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcatacaacttacaaagaacaggtatttaatatgtacaatttcaagaaacatgtttcc 440

               
Query: 241 tcaa 244
           ||||
Sbjct: 441 tcaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)