BAC Information

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BAC

Clone NameMSMg01-423K13
Chromosome6 (Build37)
Map Location 148,764,595 - 148,765,102
singlet/doubletsinglet
Overlap geneIpo8
Upstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372
Downstream geneCaprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423K13.T7 (MSMg01no423_k13.b1)MSMg01-423K13.TJ (MSMg01no423_k13.g1)
ACCAG517763AG517764
length736735
length of high quality
(start - end)
249 (56 - 304)508 (59 - 566)
definitionCHROMAT_FILE: MSMg01no423_k13.b1 PHD_FILE: MSMg01no423_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:23 2005CHROMAT_FILE: MSMg01no423_k13.g1 PHD_FILE: MSMg01no423_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTTTCTAGAGAGGATCCGCGGAATTCTCATTTG
CGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGTCGTG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACAT
ATTATTATCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCT
CTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAA
TATGTACTCACTGATAAGTGGATATTAGCCCACAACCTAGTATACCCAAG
ATATAAGATACAATTTTCTAAACCCATGAAACTCTAGAAAAATGAAGACT
GAAGTGTGGACACTATGCCCCTCCTTAGAAGCGGGA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
CACGCGGAATTCAACAGCAAATCCTGCAGCTGCTTCCAGATGCCTCCCAT
TACTCTGTGTTGCTGCAGAAACAGATTCTGAAAATATTCTATGCTCTCGT
TCAGGTCGGTGCGACTGCAGAAGACGAACTCGGAAGAACCTTGAGTTTGT
GTGTACCCTGTAGAAGCATCAGTCATTATTTAGAATCATATTTTTACCTT
AGAATCAGGCTCACAGAAACGTACTGTTAGCCATGATCACTGGGCATCCA
ATGTTATTTTTGGTGTCTGTGTGCTGTCTTTCTTCGTCTAAAGTTCCAAG
TTATAAAGAACTCCAGGTGTTGCTTGACCTAAAACTTGAGTTTAGATTCA
AGGTGCCCTGTTTGCTGGTTAGTTGTGGTTATAGGAGGAGAAGAAAGAAA
ATAGAGTCCCTCTTAATGTGAGATCACATTGATGGCCTTTTTTCATCTTC
AGCCAAATTTAAGCCAACACAGATTTAGTGGCTCTTGTGGAGGAGGGTCC
TTGTAGGCTTTATAGCAGGCAGGGAAAAACGATCAGTGCGTACTATGAGT
GAAACCCAGGTTAGTCTGATTTTGGTGACCAGTGCTGTTCTTTATACATT
TTGGAGCCTTTCCCAGATCCTTTCACTTTACCCCTTTGCCAGGACAGCTA
CCATTTTGGTAAGAGTATTTGTTACCTTTTCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_k13.g1 MSMg01no423_k13.g1 CHROMAT_FILE:
MSMg01no423_k13.g1 PHD_FILE: MSMg01no423_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:23 2005
         (508 letters)



>mm_chr6_148764395_148765302
          Length = 908

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaacagcaaatcctgcagctgcttccagatgcctcccattactctgtgttgctgcag 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 708 attcaacagcaaatcctgcagctgcttccggatgcctcccattactctgtgttgctgcag 649

                                                                       
Query: 61  aaacagattctgaaaatattctatgctctcgttcaggtcggtgcgactgcagaagacgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaacagattctgaaaatattctatgctctcgttcaggtcggtgcgactgcagaagacgaa 589

                                                                       
Query: 121 ctcggaagaaccttgagtttgtgtgtaccctgtagaagcatcagtcattatttagaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctcggaagaaccttgagtttgtgtgtaccctgtagaagcatcagtcattatttagaatca 529

                                                                       
Query: 181 tatttttaccttagaatcaggctcacagaaacgtactgttagccatgatcactgggcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tatttttaccttagaatcaggctcacagaaacgtactgttagccatgatcactgggcatc 469

                                                                       
Query: 241 caatgttatttttggtgtctgtgtgctgtctttcttcgtctaaagttccaagttataaag 300
           ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaagttaagtttggtgtctgtgtgctgtctttcttcgtctaaagttccaagttataaag 409

                                                                       
Query: 301 aactccaggtgttgcttgacctaaaacttgagtttagattcaaggtgccctgtttgctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aactccaggtgttgcttgacctaaaacttgagtttagattcaaggtgccctgtttgctgg 349

                                                                       
Query: 361 ttagttgtggttataggaggagaagaaagaaaatagagtccctcttaatgtgagatcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttagttgtggttataggaggagaagaaagaaaatagagtccctcttaatgtgagatcaca 289

                                                                       
Query: 421 ttgatggccttttttcatcttcagccaaatttaagccaacacagatttagtggctcttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgatggccttttttcatcttcagccaaatttaagccaacacagatttagtggctcttgt 229

                                       
Query: 481 ggaggagggtccttgtaggctttatagc 508
           ||||||||||||||||||||||||||||
Sbjct: 228 ggaggagggtccttgtaggctttatagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)