BAC Information

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BAC

Clone NameMSMg01-424N11
Chromosome6 (Build37)
Map Location 65,286,638 - 65,287,137
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141
Downstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424N11.T7 (MSMg01no424_n11.b1)MSMg01-424N11.TJ (MSMg01no424_n11.g1)
ACCAG518666AG518667
length734731
length of high quality
(start - end)
503 (48 - 550)613 (82 - 694)
definitionCHROMAT_FILE: MSMg01no424_n11.b1 PHD_FILE: MSMg01no424_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:53 2005CHROMAT_FILE: MSMg01no424_n11.g1 PHD_FILE: MSMg01no424_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATACATAGCTTGCAGGTCTTCTGTTGGCTTCTACCATGACATC
CCAGAAAACTAACAAGTTAAACATAAGTTAACCCACTAATGGTCCAGTTT
CTACCTTAAGTTTTATTTTAAAAGAAAGAAAGAAAGAAAAACAGACAAAA
TAGATCAGTGTTTTGTTTTTTTTTTTTTTCAACCTGAGCTACATGAAACC
CTGCCTTAAAACAACAACAACACAAAACCCTAGCTTAGGTGAGAATATCA
CTGTCCTACTCTTAAGCATGTGTCCCTCTTCCTTAATACCCATCGAGCCT
TTCTTAAACTCCTACTTTACATATGCACATACTCACATGTTCACCCATAC
ACATATATGCACAATTTTGAAACACTGGTATCAGTCTTTGTTTCGTTGGC
ATGAAACTTCAAATCAGTTTTCAAAGCTTGTAAGCCTTAGAATTGTGGGT
AAGCCTCAAGAGACTGGAGGCCCCAAGGAGTATAGAGGTCAGGTGGGGTG
GGGGGATGGGGGCNNCTTCGTGGAGATCGGGTGGGTGGAGAGAATGTGTT
GTATGTTTTTTATTTTTTTGTTTTTTATTTGTTTTTTTTTTTTTATTTTT
TTTTTTTTNTTGTTGTTTGGGATTTGTTATTTATAATTTTTTGTTTAGAA
ATATATTATATTTTTTTATTGTTAATGATTGTTG
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAACACCTGAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTAAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCTGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATTCCCAAAATATAAGGTATCA
TTTGCTAAACACATGAAACTCAAGAAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_n11.b1 MSMg01no424_n11.b1 CHROMAT_FILE:
MSMg01no424_n11.b1 PHD_FILE: MSMg01no424_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:53 2005
         (503 letters)



>mm_chr6_65286485_65287388
          Length = 904

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%), Gaps = 1/500 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatacatagcttgcaggtcttctgttggcttctaccatgacatcccagaaaacta 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattcatacagagcttgcaggtcttctgttggcttctaccatgacatcccagaaaacta 594

                                                                       
Query: 65  acaagttaaacataagttaacccactaatggtccagtttctaccttaagttttattttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acaagttaaacataagttaacccactaatggtccagtttctaccttaagttttattttaa 534

                                                                       
Query: 125 aagaaagaaagaaagaaaaacagacaaaatagatcagtgttttgtttt-ttttttttttc 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 533 aagaaagaaagaaagaaaaacagacaaaatagatcagtgttttgttttgttttttttttc 474

                                                                       
Query: 184 aacctgagctacatgaaaccctgccttaaaacaacaacaacacaaaaccctagcttaggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aacctgagctacatgaaaccctgccttaaaacaacaacaacacaaaaccctagcttaggt 414

                                                                       
Query: 244 gagaatatcactgtcctactcttaagcatgtgtccctcttccttaatacccatcgagcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gagaatatcactgtcctactcttaagcatgtgtccctcttccttaatacccatcgagcct 354

                                                                       
Query: 304 ttcttaaactcctactttacatatgcacatactcacatgttcacccatacacatatatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttcttaaactcctactttacatatgcacatactcacatgttcacccatacacatatatgc 294

                                                                       
Query: 364 acaattttgaaacactggtatcagtctttgtttcgttggcatgaaacttcaaatcagttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acaattttgaaacactggtatcagtctttgtttcgttggcatgaaacttcaaatcagttt 234

                                                                       
Query: 424 tcaaagcttgtaagccttagaattgtgggtaagcctcaagagactggaggccccaaggag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tcaaagcttgtaagccttagaattgtgggtaagcctcaagagactggaggccccaaggag 174

                               
Query: 484 tatagaggtcaggtggggtg 503
           ||||||||||||||||||||
Sbjct: 173 tatagaggtcaggtggggtg 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space:   440742
Effective search space used:   440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)