Query= MSMg01no425_d22.b1 MSMg01no425_d22.b1 CHROMAT_FILE:
MSMg01no425_d22.b1 PHD_FILE: MSMg01no425_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:24 2005
(532 letters)
>mm_chr6_111137214_111138145
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%)
Strand = Plus / Minus
Query: 5 gaattctttatattctctccattgtttacaagtaaaatgaatagttctggtaatcttaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gaattctttatattctctccattgtttacaagtaaaatgaatagttctggtaatcttaga 673
Query: 65 caaatgatatttttattgtgaaaacaaagaatgaacactgtaaggtaagggagataagcc 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 672 caattgatatttttattgtgaaaacaaagaatgaacactgtaaggtaagggagataatcc 613
Query: 125 tacaggcatgttcagaccagctcctgagacactctatttctttttcccttcatctctgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tacaggcatgttcagaccagctcctgagacactctatttctttttcccttcatctctgta 553
Query: 185 ggacccatgaaccattctcacgagacatggggagactattacactaacagactttaagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggacccatgaaccattctcacgagacatggggagactattacactaacagactttaagat 493
Query: 245 atgaaggttatttatgaccacaaaggaaaataataacgttcaataatcaagaggtagtgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atgaaggttatttatgaccacaaaggaaaataataacgttcaataatcaagaggtagtgt 433
Query: 305 gttagaatttgtgttagaattaaaggtccataacagagcatagttggtcctaaggaagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gttagaatttgtgttagaattaaaggtccataacagagcatagttggtcctaaggaagaa 373
Query: 365 gagtgaggctatgggtaatagaaaatatttcctactgctcatgagtgagattatttacct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 372 gagtgaggctatgggtaatagaaaatatttcctactgctcatgagtgagattacttacct 313
Query: 425 gtgctcatttcatacacaaattctacacacatgcacacagcatacatgcacaatatatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtgctcatttcatacacaaattctacacacatgcacacagcatacatgcacaatatatgt 253
Query: 485 gcttctattcttgatctactagcatatgtgctctaagcctttctttag 532
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gcttctattattgatctactagcatatgtgctctaagcctttctttag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_d22.g1 MSMg01no425_d22.g1 CHROMAT_FILE:
MSMg01no425_d22.g1 PHD_FILE: MSMg01no425_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:24 2005
(429 letters)
>mm_chr6_110986184_110987012
Length = 829
Score = 721 bits (373), Expect = 0.0
Identities = 409/429 (95%), Gaps = 13/429 (3%)
Strand = Plus / Plus
Query: 1 caagctcaacaaatcctgagtgggtctgacacaaacctagtaagtagcactccaaaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagctcaacaaatcctgagtgggtctgacacaaacctagtaagtagcactccaaaatgg 260
Query: 61 agtcactgagaggaagccttggcctattcagtggcccgatgattatgagtttgagacaac 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcactgagaggaagccttgacctattcagtggcccgatgattatgagtttgagacaac 320
Query: 121 tctttctgctttggtctcaagagaaaggccgtagctgatccaatagaggtgatttctgta 180
|||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct: 321 tctttctgctttggtctcaagagataggcagtagctggtccaatagaggtgatttctgta 380
Query: 181 gtttatcttcgaccgtgagaacatccagtcccattcagtaagaatattaaatagacccca 240
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttatcttagaccgtgagaatatccagtcccattcagtaagaatattaaatagacccca 440
Query: 241 gagaatgcttgaatttgccagtgtaaatgaaagtttctgtcacagatttcctcacaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaatgcttgaatttgccagtgtaaatgaaagtttctgtcacagatttcctcacaactg 500
Query: 301 aaattaataggaaagtgtggacacttaacaaatactgtaaagatttgtccaaaacaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattaataggaaagtgtggacacttaacaaatactgtaaagatttgtccaaaacaaaca 560
Query: 361 aacaaaaaacaaacaaacaaaaaatctattccccaaagacctaaaattgaagcaaacaga 420
||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 561 aacaaaaaa-------------aatctattccccaaagacctaaaattgaaggaaacaga 607
Query: 421 ctttatttt 429
|||||||||
Sbjct: 608 ctttatttt 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
