BAC Information

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BAC

Clone NameMSMg01-425L23
Chromosome6 (Build37)
Map Location 19,562,203 - 19,729,302
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425L23.T7 (MSMg01no425_l23.b1)MSMg01-425L23.TJ (MSMg01no425_l23.g1)
ACCAG519356AG519357
length736753
length of high quality
(start - end)		563 (41 - 603)430 (70 - 499)
definitionCHROMAT_FILE: MSMg01no425_l23.b1 PHD_FILE: MSMg01no425_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:03 2005CHROMAT_FILE: MSMg01no425_l23.g1 PHD_FILE: MSMg01no425_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,562,203 - 19,562,761)(19,728,873 - 19,729,302)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGCATGATTGTCAGTGTAGTGCAACAAACAACAAGCTCTAATCATAGAC
CTACAATAGAAGAAGAGAGAAAAATGACTGGGTCTTTACTGTTGTTGTTC
TTGTTGTTTGATATTTGTTTCAAAGTAGAACCTTATGATCTAATGTAGCC
CAGGTTGGCCTCAAATTGCTATGCAGCTTAATATAGTCTTGAATTATTTA
TCCTCTTTCCTCCACTGAAGGATGATCCTCTTCCTGAAGGCTGGGATGGC
AGGAATGTACCAGCCCCTACACAAGATTTTGCATGATGCTAGGATAGAAC
CCACAGCCTCAATCATTCTATGTATCTATTTTACAAACCAAACTCTTTTC
ACAATTCTATCCTGAATGAAAGCCAAAGTACATTAATGATTTTTTGTGAC
ATTCAAGTGAACAATAAAACTGACAATTTTTAAATCTCAAGTAACCAGGG
CTGGAGAGGCAACACAGTTGATAGAATACTAGCACAAAGTCCTGGTTTCA
ATTTGCAGCACCATATATGTATATAAGGNATATATTCTATTTTTATAACA
ATGTAGTCTTGCACTTCAAGAAGCAAGTAAAAAGATAAAAAAGTTCAAGG
CATTCCCCCACTACATAACAGGGGTTAAAAAAAACAACTTTGTCATTCAT
GATGGCCTTTTGTTAAAATAAAGCAATAAACAAACA

GTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTTTAAAAGTCTGCTGGGTTTTTTGATAT
CTTACCTATTTAGGAGGTACAATATCATGTTTTGGTTTATTTGAGCATTT
TGTACTCAAAACTCTAGGCAATTGGAAAATCCATCTCCATAAGTGTTGGA
CATTTTATTGTAGGAATTTGTTGAAACCCCTTGCTTTCCACTTCATTAAA
GTATTTAGTACTATTTGCTTTTTGTTCATAACATACATATTAATATAGTC
ATGGTGAATTCATAAGAAATTGTACCAAATCCTCTAGCCTTTCTTATCAT
CAAGTTTCTACAAAGTCATAAAGAATTATTATATTTTTAAGGTTAATATT
ATTTGAGTTTTTGAAATTTATTTTATTTTTCATATATGCTCAATTCAAGT
GTTTCTTAATCTAGCAGGCTCTCCCAAACATACCAATACATGGATCCAAA
TAATGTATTACCTTTGAGAGAAAAAAAATTGTTCCGCGTTTATATTTTCT
ACTTCTCTCTTGACTGGGAGAAATGACCCAGATGAAAGACTTANTAAAGG
AAATTTGGGGTTCCATTGTTTCCTTGGTCCGGTAAAAAGGGAAGGCCGGG
ATAAAACAAGGATTAAATGGGTTTAATCTAATGGAAACCTCTCGTGTTTC
TCCCCCCCCGGAGAGAATATAGGAGGGGAAAGGGGTGTCCCACCCCTCCC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_l23.b1 MSMg01no425_l23.b1 CHROMAT_FILE:
MSMg01no425_l23.b1 PHD_FILE: MSMg01no425_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:03 2005
         (563 letters)



>mm_chr6_19561999_19562961
          Length = 963

 Score = 1036 bits (536), Expect = 0.0
 Identities = 553/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagcatgattgtcagtgtagtgcaacaaacaacaagctctaatcatagacctac 64
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcatgaaggtaagtgtagtgcaacaaacaacaagctctaatcatagacctac 264

                                                                       
Query: 65  aatagaagaagagagaaaaatgactgggtctttactgttgttgttcttgttgtttgatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatagaagaagagagaaaaatgactgggtctttactgttgttgttcttgttgtttgatat 324

                                                                       
Query: 125 ttgtttcaaagtagaaccttatgatctaatgtagcccaggttggcctcaaattgctatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtttcaaagtagaaccttatgatctaatgtagcccaggttggcctcaaattgctatgc 384

                                                                       
Query: 185 agcttaatatagtcttgaattatttatcctctttcctccactgaaggatgatcctcttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcttaatatagtcttgaattatttatcctctttcctccactgaaggatgatcctcttcc 444

                                                                       
Query: 245 tgaaggctgggatggcaggaatgtaccagcccctacacaagattttgcatgatgctagga 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaaggctgggatggcaggcatgtaccagcccctacacaagattttgcatgatgctagga 504

                                                                       
Query: 305 tagaacccacagcctcaatcattctatgtatctattttacaaaccaaactcttttcacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagaacccacagcctcaatcattctatgtatctattttacaaaccaaactcttttcacaa 564

                                                                       
Query: 365 ttctatcctgaatgaaagccaaagtacattaatgattttttgtgacattcaagtgaacaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctatcctgaatgaaagccaaagtacattaatgattttttgtgacattcaagtgaacaa 624

                                                                       
Query: 425 taaaactgacaatttttaaatctcaagtaaccagggctggagaggcaacacagttgatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaactgacaatttttaaatctcaagtaaccagggctggagaggcaacacagttgatag 684

                                                                       
Query: 485 aatactagcacaaagtcctggtttcaatttgcagcaccatatatgtatataaggnatata 544
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 685 aatactagcacaaagtcctggtttcaatttgcagcaccatgtatgtatataaggtatata 744

                              
Query: 545 ttctatttttataacaatg 563
           |||||||||||||||||||
Sbjct: 745 ttctatttttataacaatg 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_l23.g1 MSMg01no425_l23.g1 CHROMAT_FILE:
MSMg01no425_l23.g1 PHD_FILE: MSMg01no425_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:03 2005
         (430 letters)



>mm_chr6_19728799_19729628
          Length = 830

 Score =  785 bits (406), Expect = 0.0
 Identities = 424/430 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttaaaagtctgctgggttttttgatatcttacctatttaggaggtacaatatcatg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttttaaaagtctgctggtttttttgatatcttacctatttaggaggtacaatatcatg 445

                                                                       
Query: 61  ttttggtttatttgagcattttgtactcaaaactctaggcaattggaaaatccatctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttggtttatttgagcattttgtactcaaaactctaggcaattggaaaatccatctcca 385

                                                                       
Query: 121 taagtgttggacattttattgtaggaatttgttgaaaccccttgctttccacttcattaa 180
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 taagtgttgaacattttattgtaggactttgttgaaaccccttgctttccacttcattaa 325

                                                                       
Query: 181 agtatttagtactatttgctttttgttcataacatacatattaatatagtcatggtgaat 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 agtatttagtactatttgctttttgttcataacatacatattaatagagtcatggtgaat 265

                                                                       
Query: 241 tcataagaaattgtaccaaatcctctagcctttcttatcatcaagtttctacaaagtcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 tcataagaaattgtaccaaatcctctagcctttcttatcatcaagtttctacaaaatcat 205

                                                                       
Query: 301 aaagaattattatatttttaaggttaatattatttgagtttttgaaatttattttatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaagaattattatatttttaaggttaatattatttgagtttttgaaatttattttatttt 145

                                                                       
Query: 361 tcatatatgctcaattcaagtgtttcttaatctagcaggctctcccaaacataccaatac 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcatatatgctcaattcaagtttttcttaatctagcaggctctcccaaacataccaatac 85

                     
Query: 421 atggatccaa 430
           ||||||||||
Sbjct: 84  atggatccaa 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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