BAC Information

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BAC

Clone NameMSMg01-426O18
Chromosome6 (Build37)
Map Location 55,693,975 - 55,694,417
singlet/doubletsinglet
Overlap genenone
Upstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
Downstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426O18.T7 (MSMg01no426_o18.b1)MSMg01-426O18.TJ (MSMg01no426_o18.g1)
ACCAG520245AG520246
length794781
length of high quality
(start - end)		448 (43 - 490)467 (74 - 540)
definitionCHROMAT_FILE: MSMg01no426_o18.b1 PHD_FILE: MSMg01no426_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:38 2005CHROMAT_FILE: MSMg01no426_o18.g1 PHD_FILE: MSMg01no426_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATAAAATAAGGTACTTTGATAATTATTCTTGTATGCTCTTCCTAAGC
CTCATCTTGTTGACATTTTTTGACTGAAACATTTGTTTAGGGGAACATTT
CCAAGATTCACTGTGTCTCTCTGCCATTCTTTAGCTCTTTTTTTCTGTTG
TGATGCTTTCTAGAACTTTCGGTCCTTAGGTAGACATGAGAAGACTAGAA
GAGGGAAGGGTAGTCATCCTCTAGTCTTCTAAACCATATTTAAGAAGTAC
AGAAGATAATTCATATATCATCTTTTCTCAGTTATGCACTCTATTTCTAA
GCCAAGGGACAGAATATTGAAGATCGGCATAATACAACTTTTACTCTTCC
CTCGGGGTCTCTGCTCACATGGTCTCACTGCCTCCCACGTAGATTTCCTT
CAGCTAAATTCATCTTCTTTATAACTGGGTCTACTATTCAGGCTGTATTC
TCCACTATGACCCTGAGAGTTGTTAACAACAGTGTAGTAGGCTTAGGATG
ATAAGTATTTTTGAAATAATCTTGTTCATAGCACTTGCCAATTATCTCCA
GGTACCAAATGTCTCAATTACTTCTCTTTCTGTGGGTAAAACCCTGGACC
AAAGCAACTTTGGAGAGGGAAAAAGTTATATTCTCCTTTAACCTGTGGCC
CCCATATGGAGGGAACCCCAACAAGGAACTTCCCGCCAAAACCTCTGGGA
AAGGAAATTGATTTAAGTCCACTAAAGTTGTCTTAAATATTTGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGACAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTTCATAGAATTGGGACCAAAACACCCATGGAAGGATTTA
CAGAGATAAAGTTTGGAGCTGAGATGAAATAATGGACAATCTAGAGACTG
TCATATCCTGGGATCCATCCCATAATCAGCCTCCAAACGCTTACACCATT
GCATATACTAGCAAGAATTTGCTGAAAGGACCCAGATAGAGCTGTTTCTT
TTGAGACTATGCTGGGGCCTAGCAATCACAGAACTGTATGCTCACAGTCA
GCTATTGGTTGGAACAGAGGGCTCACAATGGAGGAGCTAGAGGAAGTAAC
CAAGGAGTTAAAGGGATCTGCAACCCCATCGGTGGATCAACAAAATGAAC
TATCCAGTACCCCCCAGAGTTTGTGTCTCTAGCTGCAGTTATAGCAGAAG
ATGGNCTAGAAGGNCATCATTGGGGAAGAGAGGCCCCTTGGTCTTGTAAA
CTTTATATGCCTAAATACAGGGGAACGCCTGGACCAAAAAATGGAAATGT
GTGGGAGGGGGACTATTTAACTCCNCCTTCTTTTTTTCCTTTTCTTTTCC
CCCTTCCCTTTTCTCNCCTTCTCTCTTTCTTCTCCCCTCCCTCCCCTCTG
CCTTTTTTTTACCTTTTTTCTCCTTTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_o18.b1 MSMg01no426_o18.b1 CHROMAT_FILE:
MSMg01no426_o18.b1 PHD_FILE: MSMg01no426_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:38 2005
         (448 letters)



>mm_chr6_55693771_55694617
          Length = 847

 Score =  835 bits (432), Expect = 0.0
 Identities = 441/444 (99%), Gaps = 1/444 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataaaataaggtactttgataattattcttgtatgctcttcctaagcctcatc 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatttcataaaataaggtactttgataattattcttgtatgctcttcctaagcctcatc 264

                                                                       
Query: 65  ttgttgacattttttgactgaaacatttgtttaggggaacatttccaagattcactgtgt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgttgacattttt-gactgaaacatttgtttaggggaacatttccaagattcactgtgt 323

                                                                       
Query: 125 ctctctgccattctttagctctttttttctgttgtgatgctttctagaactttcggtcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctctgccattctttagctctttttttctgttgtgatgctttctagaactttcggtcct 383

                                                                       
Query: 185 taggtagacatgagaagactagaagagggaagggtagtcatcctctagtcttctaaacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taggtagacatgagaagactagaagagggaagggtagtcatcctctagtcttctaaacca 443

                                                                       
Query: 245 tatttaagaagtacagaagataattcatatatcatcttttctcagttatgcactctattt 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattcaagaagtacagaagataattcatatatcatcttttctcagttatgcactctattt 503

                                                                       
Query: 305 ctaagccaagggacagaatattgaagatcggcataatacaacttttactcttccctcggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctaagccaagggacagaatattgaagatcggcataatacaacttttactcttccctcggg 563

                                                                       
Query: 365 gtctctgctcacatggtctcactgcctcccacgtagatttccttcagctaaattcatctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtctctgctcacatggtctcactgcctcccacgtagatttccttcagctaaattcatctt 623

                                   
Query: 425 ctttataactgggtctactattca 448
           ||||||||||||||||||||||||
Sbjct: 624 ctttataactgggtctactattca 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space:   366606
Effective search space used:   366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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