BAC Information

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BAC

Clone NameMSMg01-426O23
Chromosome6 (Build37)
Map Location 52,443,777 - 52,444,134
singlet/doubletsinglet
Overlap gene1700094M24Rik
Upstream geneSnx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487
Downstream geneEG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426O23.T7 (MSMg01no426_o23.b1)MSMg01-426O23.TJ (MSMg01no426_o23.g1)
ACCAG520255AG520256
length807793
length of high quality
(start - end)
354 (74 - 427)344 (79 - 422)
definitionCHROMAT_FILE: MSMg01no426_o23.b1 PHD_FILE: MSMg01no426_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:39 2005CHROMAT_FILE: MSMg01no426_o23.g1 PHD_FILE: MSMg01no426_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATAAGAGTTCCCTCTTAGATTGATATGAATAGATTGAAGA
TTTTTATCATTTGCTGAACAATAACTGAGAATTGAATTTAATCAAAATTA
GCACATGACACGGTTAGATTGAACAGCCTCTGGCCCTCACACAATCTATA
AGATATTGCCAATTACCTTCCCGCAATCTCTCTCTCATTAAAACAAAAGG
CCATCGCCATAGAAGCCCGTGATTGTAAGCTAAGGGGCAGCAGCTGTTTT
CGCTTAAAAATTTCGATCACAGTGACATTTTTTAAAAAATCAAATCCATA
GTTAGCATGTGTAAGAAGAGCTATTTAAGATAGAACACTCTTCCATACCT
CTTAATTGCAATCTAGCGCCCTGTTGCAAAGTGTTTACTGTGCATCTCTT
CGAGTCCCAGCTCTGTCTTGTCCTGACTGTATGTGAATCATCCAGCAAGG
TCTTTAACTGCCCTGTTGCTGGGNGGCTTCCCCTATGCAAGGGGAAAAAA
TCCTGCAACCAAAGGGAATGGGAAAATACCCGCTAAAGTTATTGTACTTA
ATAAAGGGCCCTACCCCATCTTGAAGGGGCCCTCCCACCCCCCCCCCGCG
GGGGGGAACGGCCACCGGTGTTATGTCTTTCCCCCCTCGCCGGGATCTGT
TTTTATTTTTCCCCCAAAGCGAAAAAATATTTTTGGCCCCCTTCTTCTTT
GGGTATATTATTTATTTTCACACCCGCCCTCCTAAAAAAATTTCTCACAT
AATCGGN
TCTTGGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAAGGATTTTCTTGGT
GAGTGATGGATGTGGGAGGGCCTGAGGCACTGAGAGCTGTGCTACCCTTG
GGTACGTGGTCCTACTTTGTATAAAAAAAGCGGGCTGGCCTCAAACTCTC
AGAGACACACCAGCCTTTGCCTCCAAGTGCTGGGATTAAAGGCTTACATC
AGCAAGACTGGTGTTTGTACCCTTCTTGCGGAGGTAAATATTGCTTCAAG
AATTGATACGTCATCAAAGGTCAAATGTGCTTGGCATGCTTCAGTTTCCC
TTCATGGTAGACTATTACCTGTAATAAGCCAAATCTACCCTTTCTCCAAG
TTGCCTTTGGTCATGCTGTTTGTCACACCAATGGGAATCAAACCAAGGAA
GGGAATGAAGTCCTGGTGATCTGAGTCCAATAAAATAAGTCCTCAAAGCC
ATGGCACCTGTGGTGGTTTGGAAAACTCTCTGGCCCATGTAATCTGTACT
ATTAATTGGTATATTCTCCTGATAACTTACGCCCCTCTCTTTACAATTTC
TCTTACTCATTCTTTTTTAATTTTCTTTCTACTCTTTTTACTTTTTCTTA
TTTCTATTTCTCCTTATACCCCTTTCCCTTTTTTCTTATCTTTATCCCTT
CTCCTTCCATCCCTACTTTTGTTTCCCACCCATATTTCCATCACCCTACA
TTTCTTCTCTCCTAACTCCCCTTTTTTTTCCTTCATTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_o23.b1 MSMg01no426_o23.b1 CHROMAT_FILE:
MSMg01no426_o23.b1 PHD_FILE: MSMg01no426_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:39 2005
         (354 letters)



>mm_chr6_52443577_52444334
          Length = 758

 Score =  630 bits (326), Expect = 0.0
 Identities = 349/358 (97%), Gaps = 4/358 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagattgatatgaatagattgaagatttttatcatttgctgaacaataactgagaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttagattgatatgaatagattgaagatttttatcatttgctgaacaataactgagaatt 499

                                                                       
Query: 61  gaatttaatcaaaattagcacatgacacggttagattgaacagcctctggccctcacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 498 gaatttaatcaaaattagcacatgacacggttagattgaacagcctctggccctcacgca 439

                                                                       
Query: 121 atctataagatattgccaattaccttcccgcaatctctctctc--attaaaacaaaaggc 178
           ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 438 atctataagatattgtcaattaccttcccgcaatctctctctctcattaaaacaaaaggc 379

                                                                       
Query: 179 catcgccatagaagcccgtgattgtaagctaaggggcagcagctgttttcgcttaaaaat 238
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 catcgccatagaagcccgtaattgtaagctaaggggcagcagctgttttcgcttaaaaat 319

                                                                       
Query: 239 ttcgatcacagtgacattttttaaaaaa--tcaaatccatagttagcatgtgtaagaaga 296
           || |||||||||||||||||||||||||  |||||| |||||||||||||||||||||||
Sbjct: 318 tttgatcacagtgacattttttaaaaaaaatcaaattcatagttagcatgtgtaagaaga 259

                                                                     
Query: 297 gctatttaagatagaacactcttccatacctcttaattgcaatctagcgccctgttgc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctatttaagatagaacactcttccatacctcttaattgcaatctagcgccctgttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 758
Length adjustment: 9
Effective length of query: 345
Effective length of database: 749
Effective search space:   258405
Effective search space used:   258405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)