BAC Information

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BAC

Clone NameMSMg01-428J10
Chromosome6 (Build37)
Map Location 146,427,967 - 146,612,620
singlet/doubletdoublet
Overlap geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175
Upstream geneLOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream geneStk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428J10.T7 (MSMg01no428_j10.b1)MSMg01-428J10.TJ (MSMg01no428_j10.g1)
ACCAG521519AG521520
length769746
length of high quality
(start - end)
246 (77 - 322)166 (78 - 243)
definitionCHROMAT_FILE: MSMg01no428_j10.b1 PHD_FILE: MSMg01no428_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:49 2005CHROMAT_FILE: MSMg01no428_j10.g1 PHD_FILE: MSMg01no428_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,612,375 - 146,612,620)(146,427,967 - 146,428,131)
sequence
CCCCCATACXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATCCG
NGGAATTCTTCTTTTACGCAACCAACAATTCAAACTTCCAACTCCAACAA
GCTGGGGTTACAAGAGGGAGAATGAGAAGAAAAGAACTCTCTCAGCAGGA
GAATGTTTACCCAGCAAGCACGAGGCCCTGGGCTCCAGCCCCAGCATCTA
AGAATTTAAAATGAAGATAAAATCAGTGTTACTTACTTAAAAACAATACG
CTATACCCTATAAGAACAGATACACTTTATTTCCCACACATACACATAAT
TTTTGAGCACAGAAAGATTTTTGTTTTTGCTGGGTTGTGATATCTTTTCC
TGCTTTGCGTCAGTTATCATATAACATATTGCTTTGGCTGAAGTATGTGA
AGAAGATCTGAATAAACATTTTAGAGAGAATATATGTATTTTTTTTTAAA
GCTAGGTATCGTTTATAGCCCATGCTGGACTGATTTGTGCTTGTTAGGCC
AGGCTGGCCTCAATTTTGCTATCGTTCTCCCACTCCTACCTTCTTTGTGC
ACGGTGGTGTGCGCCCCCTGCCTGTTCCCCCCGAAAATCCTTATCGTCGC
CTCAAAAGGTTGTCCATGTCTCCTTTTAGTTCTATACTCCTTACTGTATA
CTTTTTTTCTGTCTCCGTTATCTTACTCCCCCATTTTTCCTTTGCCTCCG
CCATTTATTGAACCGCTTTTGCCCCCCCCCGCTTTTAGTCTCTCTCCCTC
CCCCCCTTTTTCTCTTTCC
TCCGATGAAGTGTGTAGGCCTGGAGGNCGCCTGTTTCAAAACATTTAGGN
GAACTATAGAATTATCTAAAAACATTCCTTCTAAGCTCCACCCCCTAGTC
TCAGTGCTTTGCAGTCTTATAGAGAAAGGGGGAAGGAAGACAATCAGATC
ACAGCATACTTCTGCAAACACGGTTGTCTTCTCTACCCAGAGCCTAGTGA
AAGTCAGAGTAACCCAAGGAGCTGCCCTGCTCCTGATACAACTTCTGGGT
TTTTTAGNCATTTCACCCCTAAAGACTTAAAGAAATGGAAATGAGTTTGG
AAAAAAGAGGAGGATTATCGTAATTTAGCAGAAGCGCCCATATACCTACG
TCATAAGATATATGTTATACCACACATAAGACCACAGACACTAATAACCC
ATTAGTGCTGGGGTTGGAGAGATGACTCCATGATTAAGAGCACTGGTTTT
TAATAGAGAACTAGGGTTTGGTTCCTAGTACTCACATGGCAGTTCATAAC
CACCTGTAACTCCCACTTCAGGGTATTCAATGCCCTCTTTTGTTTTCCTT
GCATTCACGGCTTATATATGTGTTCCAGACATACATGCATGCTTACAATG
TATTTTATTCCTCTCTTTTATATCTATAACGTTGATCCTGTGCGCACTCT
GTTGTTTCTTCACCAATACCTGCGTATGTATTTCCCCCCATTTAGGTGCT
TTAATCTCATGTCATCTTTTTCCGAGTGTCATACCTTTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_j10.b1 MSMg01no428_j10.b1 CHROMAT_FILE:
MSMg01no428_j10.b1 PHD_FILE: MSMg01no428_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:49 2005
         (246 letters)



>mm_chr6_146612029_146612674
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcaaacttccaactccaacaagctggggttacaagagggagaatgagaagaaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aattcaaacttccaactccaacaagctggggttacaagagggagaatgagaagaaaagaa 533

                                                                       
Query: 61  ctctctcagcaggagaatgtttacccagcaagcacgaggccctgggctccagccccagca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 532 ctctctcagcaggagaatgtttacccagcaagcacgaggccctgggttccagccccagca 473

                                                                       
Query: 121 tctaagaatttaaaatgaagataaaatcagtgttacttacttaaaaacaatacgctatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tctaagaatttaaaatgaagataaaatcagtgttacttacttaaaaacaatacgctatac 413

                                                                       
Query: 181 cctataagaacagatacactttatttcccacacatacacataatttttgagcacagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cctataagaacagatacactttatttcccacacatacacataatttttgagcacagaaag 353

                 
Query: 241 attttt 246
           ||||||
Sbjct: 352 attttt 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no428_j10.g1 MSMg01no428_j10.g1 CHROMAT_FILE:
MSMg01no428_j10.g1 PHD_FILE: MSMg01no428_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:49 2005
         (166 letters)



>mm_chr6_146427766_146428331
          Length = 566

 Score =  304 bits (157), Expect = 2e-87
 Identities = 163/165 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttctaagctccaccccctagtctcagtgctttgcagtcttatagagaaagggggaaggaa 61
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 202 ttctaagctccaccccctagtctcagtgctttgcagtcttagagagaaagggggaaggaa 261

                                                                       
Query: 62  gacaatcagatcacagcatacttctgcaaacacggttgtcttctctacccagagcctagt 121
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gacaatcagatcacagcaaacttctgcaaacacggttgtcttctctacccagagcctagt 321

                                                        
Query: 122 gaaagtcagagtaacccaaggagctgccctgctcctgatacaact 166
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaaagtcagagtaacccaaggagctgccctgctcctgatacaact 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)