BAC Information

Click to search

BAC

Clone NameMSMg01-429A21
Chromosome6 (Build37)
Map Location 119,515,489 - 119,516,083
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneErc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A21.T7 (MSMg01no429_a21.b1)MSMg01-429A21.TJ (MSMg01no429_a21.g1)
ACCAG521875AG521876
length738788
length of high quality
(start - end)
605 (28 - 632)38 (71 - 108)
definitionCHROMAT_FILE: MSMg01no429_a21.b1 PHD_FILE: MSMg01no429_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:25 2005CHROMAT_FILE: MSMg01no429_a21.g1 PHD_FILE: MSMg01no429_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCCCACAG
AGTTTTCTAAGAAGCTGAACCTGCCTTGAGGAGAGGGAACAACATCGTGG
AATCCAGTGTGCAGGTAACGTTGGTCTTCAGGCGGTTTTGGATGTCCTGG
AAACTTGCCAGGGATTGCAGTAGAACCAGCGTCCTCCTGAGCACGGGTGC
GCGCAGCGTGGCACCCAGCGTATGTGCACAGCTGTGCCGATGCATGCACA
AGAGGTGTCGGCCAAGCGAGGGTCTCCATATTAAGGAGGAAATGAATAAA
CAAGGTCAACATTTTTGTTTCCCTCCGAGGCTTGCAAAGAAGGTGTTAAG
AGCACAAGATTTAAATCATAAACTTGGTTAAAAGGCAGACGGCCTAATGT
GTGACTCTTGCCAACTTGGACGTGCTCCTTGGGGTAATGCTACACTGAGC
TAATGCAGGAGGAATCGTGGGAGGAAAAGGCAGGCTGGGAGCAAGCCGCA
GCGTCAACCAAGGGCAGACCAGCTGGAGCCCGAGGGCCTCAGTGCCTCTT
CCTAGTTCCCCTCCTACAGTTCCCTTGACTGATAGAGTTTCTGTTGGGCA
TAAAGGACTTGCAGCAAGGTAAGGGAGACACAGAACAGACCCAAATCACC
CATGGAACAATTGCCTAAGGAGCAGGAAAGACAGTCAGCAGGCCTGCCAG
CTCGGGACACGTCACCTCTGTAGGCTCCCATTCTGTCT
TGAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCACATTCAGGGCTATAACGTGAGTCTCTGACTCAAGGAGA
GAGGGGGAGGGGGCAGGGTTATTTTTTTTTTTTCTTTTTTCTTTTTCTTT
CTTTTTCCCGTGGGGTGCCCCCCCTTTCCCCCCCTCCTCCCTTTTTCCTC
CTCCCTCTTCCCCCCCCCCCCCCCCCCCCTCTCCTCTCTTCTCCTCTCTC
CTCTCCCCTCCCCTCTTTCTTCCCCTTCCCCTCCCTCCCCCCCTCCCCCC
TTTTTTTTTTTTCCCCCCCTCCCGTCCCCCTTTTCCCTCCGTTTTTTTTT
TTTTCCTTTCCACTTCTCTCCTTTCCCTCCCTTCCCTTTCCCTTTTCCCT
TTTCCTCCCCCCTTCTTCCTTTTCCCCTCCTTTTTCCCCCCTTTCCTTTT
CCCCCTTTTCCTTTTTCCCCTCCCTTCCTTCTCTTCCCCCCCTTTTTTTT
TCCCCCCCTTACCTTTCTTTTCCCCCCATACCCTCTCCCCTNCTACCTCT
CTCACTCTTTATCCATTTACCCTCCTCCATTATATCCCTATCACTACAAT
TCTCCCCACCCATAAAATAATACCTATTTTTCCCTCATACATTTCTCCTT
TATTTCACAACCCCTATACATAACCAACCCCACATTTCCTTTTCCTTAAC
CATCCCCAAATAATTTCCCTATATCCCTCCCCCCTTTTAACACACACATC
CCCCATATATATAATCCCCACAATCCCCCCCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a21.b1 MSMg01no429_a21.b1 CHROMAT_FILE:
MSMg01no429_a21.b1 PHD_FILE: MSMg01no429_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:25 2005
         (605 letters)



>mm_chr6_119515279_119516283
          Length = 1005

 Score = 1112 bits (575), Expect = 0.0
 Identities = 590/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaattcccacagagttttctaagaagctgaacctgccttgaggagagggaacaacatcg 70
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaattcccacagaggtttctaagaagctgaacctgccttgaggagagggaacaacatcg 746

                                                                       
Query: 71  tggaatccagtgtgcaggtaacgttggtcttcaggcggttttggatgtcctggaaacttg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggaatccagtgtgcaggtaacgttggtcttcaggcggttttggatgtcctggaaacttg 686

                                                                       
Query: 131 ccagggattgcagtagaaccagcgtcctcctgagcacgggtgcgcgcagcgtggcaccca 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccagggattgcagtagaaccagcgtcctcctgagcacgggtgcgcgcagcgtggcaccca 626

                                                                       
Query: 191 gcgtatgtgcacagctgtgccgatgcatgcacaagaggtgtcggccaagcgagggtctcc 250
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 gcgtatgtgcacagctgtgccgatgcatgcacaagaggtgtcggccaagcaagggtctcc 566

                                                                       
Query: 251 atattaaggaggaaatgaataaacaaggtcaacatttttgtttccctccgaggcttgcaa 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atattaaggaggaaatgaataaacaaggtcaacatttttgtttccctccgaggcttgcaa 506

                                                                       
Query: 311 agaaggtgttaagagcacaagatttaaatcataaacttggttaaaaggcagacggcctaa 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaaggtgttaagagcacaagatttaaatcataaacttggttaaaaggcagacggcctaa 446

                                                                       
Query: 371 tgtgtgactcttgccaacttggacgtgctccttggggtaatgctacactgagctaatgca 430
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtgactcttgccaacttgggcgtgctccttggggtaatgctacactgagctaatgca 386

                                                                       
Query: 431 ggaggaatcgtgggaggaaaaggcaggctgggagcaagccgcagcgtcaaccaagggcag 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaggaatcgtgggaggaaaaggcaggctgggagcaagccgcagcgtcaaccaagggcag 326

                                                                       
Query: 491 accagctggagcccgagggcctcagtgcctcttcctagttcccctcctacagttcccttg 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accagctggagcccgagggcctcagtgcctcttcctagttcccctcctacagttcccttg 266

                                                                  
Query: 551 actgatagagtttctgttgggcataaaggacttgcagcaaggtaagggagacaca 605
           |||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 265 actgatagagtttctgttgggcctaaaggacttacagcaaggtaagggagacaca 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)