BAC Information

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BAC

Clone NameMSMg01-429F19
Chromosome6 (Build37)
Map Location 39,399,803 - 39,585,200
singlet/doubletdoublet
Overlap geneDennd2a, Adck2, Ndufb2, Braf
Upstream geneD130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601
Downstream geneFth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429F19.T7 (MSMg01no429_f19.b1)MSMg01-429F19.TJ (MSMg01no429_f19.g1)
ACCAG522109AG522110
length727739
length of high quality
(start - end)
512 (42 - 553)361 (76 - 436)
definitionCHROMAT_FILE: MSMg01no429_f19.b1 PHD_FILE: MSMg01no429_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:49 2005CHROMAT_FILE: MSMg01no429_f19.g1 PHD_FILE: MSMg01no429_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,584,728 - 39,585,200)(39,399,803 - 39,400,162)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTTGAGTTGTCTTTTGCAAAAACTATTATACAAAATTCTGTTTTGCTG
GTTGCACATATAGTCTATAACCCCTATCACTTGGGAGCTGGAGACGGGAA
ACTGAGTCCAAACCAGCTTGGAATTTATGGTCACTTGCCTCAAAACAACA
GCATGCTATTTGGTTTAATATTAATTAAGCCTGTCTCTGCCCTATTAGTG
CTGGGCTTAAAGGTATGCAATACAACACCCCTGACCCGTATTTGTTTTAT
AAAAGTGTTGTATATGTGAATACGGGAACGGGAATCACCGGGTTTACTAG
TGGGTGTCTCCAGCAAGGAAAATAGAGACTTAGTATAAACTTTAAAAACT
GCGAAAGCTAACGTGTAAAACTCTTAACAGCATTTGTTAGGGTAGGAATA
GGAGTAATTGTACTCTATCTTTTGGGATGCTGGGTCTTAATTATCACTTA
CTACAAAGTAATAGAAAATCATGTGAAAAAATGTAAACACAAATACATGC
CAGTAACTTACCATCCAGATAACTGTATTTGATGGCTTAAGGTGTGTTTT
GTATCCTTCATAATTGTGCATGTTAACGCTGTACATAACCGGTCTTGTTC
CTATTTGCAACCTATTAAGTCAGGNTTTGCCCTCCTTTTACTCTCTTGCC
CCCCTCCCTCGGNTAATCACTATCACT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGGATACAGTTGAGTGGCAA
GGACAGTGTGCTTTTAAACAGTCACACGGCAACTAGAACAACAGTGGGGA
AAGGATGGCGGCTTCTGATGCAAAGGATGGCTGATTACTTCCAGGCTCTA
GAATGCTGCCATAAACCAATACAGGTCATCAAGCAGGGAGACTTTGCTCC
ACAGGGTCTGGAAAGCAGAAGGCTTTGATCCCCAGAGCATATGCAGCTGA
GATGGGCAGGGTCCTGCTGGGACTGTACCCTAAGTTCCATTGTCTCTGAG
AAGTTATTTCTCTTCTGGTGAAATGAGCCCATTCAAATCAGATTAGATTA
TAATAAATGTAGGTTTATTGGGAAGCTGCTCTCAGTTGGGTGAGTTCACT
GGCCCTGAAGACTGAGGTCAGGCACACTGCCATGCCCCAGCCAGAGTTTA
TACCATTTTTCCCCCTCCCCCCTCTTCCCCTCTCTTTCCCTTCTTCTCTT
CCCTCCCCTTTCTTTCCCCTCCCCCCTTTCTTCTTTTTCCCCCCTCCCCC
CTTTCCCTTCCCCTCCCTTTTCCTTTTTTTCCTTTTTTCCCTTTCCCCCC
CCCTCCCTTCCCTTCCTCCCCTCCTCTTCCCCTCCTTTTTTCCCCTCACC
TTCCCCTCCCCCTCATTCTTCTCCCCTCCCTCTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_f19.b1 MSMg01no429_f19.b1 CHROMAT_FILE:
MSMg01no429_f19.b1 PHD_FILE: MSMg01no429_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:49 2005
         (512 letters)



>mm_chr6_39584289_39585200
          Length = 912

 Score =  868 bits (449), Expect = 0.0
 Identities = 467/473 (98%)
 Strand = Plus / Minus

                                                                       
Query: 40  tacaaaattctgttttgctggttgcacatatagtctataacccctatcacttgggagctg 99
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 tacaaaattctgttttgctggttgcacatatagtctataacccctatcacttgggagctg 853

                                                                       
Query: 100 gagacgggaaactgagtccaaaccagcttggaatttatggtcacttgcctcaaaacaaca 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gagacgggaaactgagtccaaaccagcttggaatttatggtcacttgcctcaaaacaaca 793

                                                                       
Query: 160 gcatgctatttggtttaatattaattaagcctgtctctgccctattagtgctgggcttaa 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gcatgctatttggtttaatattaattaagcctgtctctgccctattagtgctgggcttaa 733

                                                                       
Query: 220 aggtatgcaatacaacacccctgacccgtatttgttttataaaagtgttgtatatgtgaa 279
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aggcatgcaatacaacacccctgacccgtatttgttttataaaagtgttgtatatgtgaa 673

                                                                       
Query: 280 tacgggaacgggaatcaccgggtttactagtgggtgtctccagcaaggaaaatagagact 339
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 672 tatgggaacgggaatcaccgggtttactagtggttgtctccagcaaggaaaatagagact 613

                                                                       
Query: 340 tagtataaactttaaaaactgcgaaagctaacgtgtaaaactcttaacagcatttgttag 399
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 612 tagtataaactttaaaaactgcgaaagctaacgtgtaaaactcttaacggcatttgttag 553

                                                                       
Query: 400 ggtaggaataggagtaattgtactctatcttttgggatgctgggtcttaattatcactta 459
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 552 ggtaggaataggagtaattgtactctatcttttgggatgctgtgtcttaattatcactta 493

                                                                
Query: 460 ctacaaagtaatagaaaatcatgtgaaaaaatgtaaacacaaatacatgccag 512
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 492 ctacaaagtaatagaaaatcatttgaaaaaatgtaaacacaaatacatgccag 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_f19.g1 MSMg01no429_f19.g1 CHROMAT_FILE:
MSMg01no429_f19.g1 PHD_FILE: MSMg01no429_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:49 2005
         (361 letters)



>mm_chr6_39399603_39400363
          Length = 761

 Score =  627 bits (324), Expect = 0.0
 Identities = 351/360 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaggatacagttgagtggcaaggacagtgtgcttttaaacagtcacacggcaacta 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct: 201 cagagaggatacagttgagtggcaagtacagtgtgcttttaaacagtcacacagcaacga 260

                                                                       
Query: 61  gaacaacagtggggaaaggatggcggcttctgatgcaaaggatggctgattacttccagg 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcaacagtggggaaaggatggcggcttctgatgcaaaggatggctgattacttccagg 320

                                                                       
Query: 121 ctctagaatgctgccataaaccaatacaggtcatcaagcagggagactttgctccacagg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctagaacgctgccataaaccaatacaggtcatcaagcagggagactttgctccacagg 380

                                                                       
Query: 181 gtctggaaagcagaaggctttgatccccagagcatatgcagctgagatgggcagggtcct 240
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gtctggaaggcagaaggctttgatccccagagcatatgcagctgagatgggcagggtctt 440

                                                                       
Query: 241 gctgggactgtaccctaagttccattgtctctgagaagttatttctcttctggtgaaatg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgggactggaccctaagttccattgtctctgagaagttatttctcttctggtgaaatg 500

                                                                       
Query: 301 agcccattcaaatcagattagattataataaatgtaggtttattgggaagctgctctcag 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccaattcaaatcagattagattataataaatgtaggtttattgggaagctgctctcag 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)