BAC Information

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BAC

Clone NameMSMg01-429F24
Chromosome6 (Build37)
Map Location 83,113,095 - 83,113,638
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik
Downstream geneDctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429F24.T7 (MSMg01no429_f24.b1)MSMg01-429F24.TJ (MSMg01no429_f24.g1)
ACCAG522119AG522120
length726750
length of high quality
(start - end)
544 (58 - 601)430 (73 - 502)
definitionCHROMAT_FILE: MSMg01no429_f24.b1 PHD_FILE: MSMg01no429_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:50 2005CHROMAT_FILE: MSMg01no429_f24.g1 PHD_FILE: MSMg01no429_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTA
ATTCTGGCTAGACTGGCTGGCCAGCAAACCCTAGGGCTTGTCCCATCTAA
ACTTCCCCAGAATGGAGAGTATGGGCTGGGGGCTTATTTGCAGGTCCTCA
ATGCTTTGCTTTACATAGTAAGTGCTCTACTGGCTGAGCCAGCCTCCTGG
CCCACTTTCTAGTCTTTTGCTGTTCCGTGTTGTGCAACCATGAGGGTACA
TAGGACATTTCACATGTGAGCATATTTGTGTATATATTAATTGCTTAAAA
TGTATTGGCTGTGTGTATGTGTCTGGTTGATACAATGTTTTTCTGTCATA
TGCAAAATTCTAGGTTCATTTCCCTGAACACAGGAGTAAAAATCAAACGG
AAAAAAATAGGTGTTTCAATCCAAGATGAACTAATAAGCTCCAGGAGCTA
GGAAAGGAGAGCGAATTAATGTGTGGACTCACTCTATGCTTATAATCACA
GTTATGCACTTCCTCCCTTACTGAAAGGACAAAGTTCTGCCTGGGAGCCA
GATTTACCTTACGGTCCTTCTATCTTCCCTTTTAACGAGTGTTTTGAGGA
CCAGGGGGGTGGGGCGGTGGTTTCTTTTCCCCTTCTTTTTTCTTTTTTCT
CCCGCCCCTCCTTTTTTCCTTCTCCCTCTCCCTTCCTCTCTTTTTTCTTC
CTCTTCCTCCCTCCTTTCTCCCTCCG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAACAGCCTGAGCTTCACAGTAAGAC
CCTGTCACAACCTCCCCCAAAATTTATTTTATATGTATGGGTGTTTTGCC
TGCATGTAAGTAAGTCCACTACTTGCATGCTCAGTGCCTAGAAAGGCCAG
AGAGGGTGCTGAATTCCCTGGAACTCTATTTACAATGGGTTATGAACCAA
GCCAGATCCTCAAAAGCAGAAATGAACAGACAGCTCCATGTGCTTACTGG
AAACCTCTGTCCTCTATCAGTAATAGACAGATCCCAGAGGCAGGAAAATC
TTTAAGGCACAACTGAACTCATTCATCAAACCAAAGGATACAATCGGCAT
CTATAGAATAAGTCGTCAAAAACAGACAAATGTGTAGTATTCTCAAGCTC
AAATGGAACATGAGCAAAGGTTGACCACACTGTGGGCCATAAAGAACTCC
CTCACAGGGCTAGTGAGATGACTCAGCCGGGACAAGCGCTGACTTTACAT
CCCATCTCCCCTTTGGGGCCTTTTAGACACCTGTTATGAGATTTGAACCC
CTTTTTCTGGTGCATCTTGAAGCATCTTCCCGCGCTCTTTTGACTAATAA
TCTACTAAATTTTTTATTTTTTATCCCATTCAGTTTTCCCCCCCCTCCCT
CGCTGTTTCTCTATTTACCTCCTTTTATCTCTCTTCACCCCCTTTTCTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_f24.b1 MSMg01no429_f24.b1 CHROMAT_FILE:
MSMg01no429_f24.b1 PHD_FILE: MSMg01no429_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:50 2005
         (544 letters)



>mm_chr6_83112749_83113692
          Length = 944

 Score = 1052 bits (544), Expect = 0.0
 Identities = 544/544 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagactggctggccagcaaaccctagggcttgtcccatctaaacttccccagaatggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ctagactggctggccagcaaaccctagggcttgtcccatctaaacttccccagaatggag 831

                                                                       
Query: 61  agtatgggctgggggcttatttgcaggtcctcaatgctttgctttacatagtaagtgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agtatgggctgggggcttatttgcaggtcctcaatgctttgctttacatagtaagtgctc 771

                                                                       
Query: 121 tactggctgagccagcctcctggcccactttctagtcttttgctgttccgtgttgtgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tactggctgagccagcctcctggcccactttctagtcttttgctgttccgtgttgtgcaa 711

                                                                       
Query: 181 ccatgagggtacataggacatttcacatgtgagcatatttgtgtatatattaattgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ccatgagggtacataggacatttcacatgtgagcatatttgtgtatatattaattgctta 651

                                                                       
Query: 241 aaatgtattggctgtgtgtatgtgtctggttgatacaatgtttttctgtcatatgcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaatgtattggctgtgtgtatgtgtctggttgatacaatgtttttctgtcatatgcaaaa 591

                                                                       
Query: 301 ttctaggttcatttccctgaacacaggagtaaaaatcaaacggaaaaaaataggtgtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttctaggttcatttccctgaacacaggagtaaaaatcaaacggaaaaaaataggtgtttc 531

                                                                       
Query: 361 aatccaagatgaactaataagctccaggagctaggaaaggagagcgaattaatgtgtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aatccaagatgaactaataagctccaggagctaggaaaggagagcgaattaatgtgtgga 471

                                                                       
Query: 421 ctcactctatgcttataatcacagttatgcacttcctcccttactgaaaggacaaagttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctcactctatgcttataatcacagttatgcacttcctcccttactgaaaggacaaagttc 411

                                                                       
Query: 481 tgcctgggagccagatttaccttacggtccttctatcttcccttttaacgagtgttttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgcctgggagccagatttaccttacggtccttctatcttcccttttaacgagtgttttga 351

               
Query: 541 ggac 544
           ||||
Sbjct: 350 ggac 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)