BAC Information

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BAC

Clone NameMSMg01-429N16
Chromosome6 (Build37)
Map Location 72,551,488 - 72,730,705
singlet/doubletdoublet
Overlap geneRetsat, Tgoln1, LOC100038890, Tcf3
Upstream geneJmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429N16.T7 (MSMg01no429_n16.b1)MSMg01-429N16.TJ (MSMg01no429_n16.g1)
ACCAG522485AG522486
length755749
length of high quality
(start - end)
457 (59 - 515)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no429_n16.b1 PHD_FILE: MSMg01no429_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:27 2005CHROMAT_FILE: MSMg01no429_n16.g1 PHD_FILE: MSMg01no429_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,551,488 - 72,551,944)(72,730,461 - 72,730,705)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTA
TATTGCACGAATGCGGGAGGGCAACATTGGCCGTTTTATCTTGGACCAGA
TCACTGAAGGGCAACTGGACTGGGCCCCCATGGCCTCCCCTTTTGACTTG
ATGATACTAGAAGGGCCCAATGGCCGAAAGGAGTTCCCCATGTACAGTGG
GAGGAAAGAATACATCCAGGGCCTTAAGAAGAAATTCCCCAAGGAAGAAG
CTGTCATTGACAAGTACATGGAGTTGGTTAAGGTAGTATGCACCATGATT
AGCATCCCTAGTTTATTTCCAACAAGACTGGCCTTTTCATTAGTGAAGAA
ACTGGTGGGGTAGGAAGAGAGGGCTGAGTTGGGGAGGCAGGAAGGAATGG
TCATGTCTGTCCTGGTTCCAGTGTAAGCTTGTGTTTGCCTGTGCCCTGCT
TGGCTCCCCAGCTGCAGTCCTCACACTGGCCTCTAGATGGTACCCTTGCT
AAGTCAGGCTTTGAGGAAGTTAGATGTCCTCTGAGATATGCCACACTTTT
GTGTATCTGATGCACAGTCTCACCATGCTGCCCTGGCTGGTCTGCAATTC
ATCAGACATATCTCCTGTCTTCTGGCCAGCTTATGAATATTTCACCCTGC
CTTTTCGTAACAATCATCGCTGGCAACACAATCTGAACTGTCGGCGTATG
CTCTTTCTGCGCTTCTATCCTGTGATCATTATTCCACACTTCTCCTCTAT
TTTCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTGGCCTTTTTTTTTTTTTTTTTTTTA
ATTCTTTAAAAAGTATTTTATTTTATTATTAACGTTCCACACATGCTGCA
ATCCAATCGCTGGAGATTTTCTCAAAGGTAAAGTGAACACATCTGATATT
TCACTAAAACTTTTAGAAATTATTATTGCTTGTGTGCATTAGGTGTGGGG
AGTGGAAAGTACCCCAGAGTGTGTATGGAAGTCAGAGGACAACTTTATAG
ACGTGGTTCTTTTCCATTTTTACGTGGGTTTGAACTCCGATTGTGAGGCT
TCGAAGTAAGCACCTTTCTATGCCATCTTGCAGGTCCTTGTGGTCAGCCT
TCTGACCCTCTTGCCTCTATCTCCTGAATGTTGTGATTACAGACCTGTGT
TACCAGACCTGTTTTATTTCATTCTGCGATTACCCCACCNCCCCTCCCTC
GTTCTCTCATTTTATCACCCTTGCGCTGCCTTTTCCACCCCTCTTGCCTT
TCCNCACTTTTTTCCAACTCTTTTTTTGACCGGCCCAAAGTTCTCCCCCT
CTTTTTTTTCAACTATCCTCATCTCCTCTTTTCACTTCCTTACGTCCCCC
TGTTTTCTTTTTTTCTTCCCCTTCCTCTTTTTACCCCCCTCCCTTTCTTT
TTCCCTTTTTTACCCCCCATTTTCTCCTCTTTCCCCCCCCTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_n16.b1 MSMg01no429_n16.b1 CHROMAT_FILE:
MSMg01no429_n16.b1 PHD_FILE: MSMg01no429_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:27 2005
         (457 letters)



>mm_chr6_72551288_72552144
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatgcgggagggcaacattggccgttttatcttggaccagatcactgaagggcaactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatgcgggagggcaacattggccgttttatcttggaccagatcactgaagggcaactgg 260

                                                                       
Query: 61  actgggcccccatggcctccccttttgacttgatgatactagaagggcccaatggccgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggcccccatggcctccccttttgacttgatgatactagaagggcccaatggccgaa 320

                                                                       
Query: 121 aggagttccccatgtacagtgggaggaaagaatacatccagggccttaagaagaaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aggagttccccatgtacagtgggaggaaagaatacatccagggccttaagaagaagttcc 380

                                                                       
Query: 181 ccaaggaagaagctgtcattgacaagtacatggagttggttaaggtagtatgcaccatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaggaagaagctgtcattgacaagtacatggagttggttaaggtagtatgcaccatga 440

                                                                       
Query: 241 ttagcatccctagtttatttccaacaagactggccttttcattagtgaagaaactggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagcatccctagtttatttccaacaagactggccttttcattagtgaagaaactggtgg 500

                                                                       
Query: 301 ggtaggaagagagggctgagttggggaggcaggaaggaatggtcatgtctgtcctggttc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtaggaggagagggctgagttggggaggcaggaaggaatggtcatgtctgtcctggttc 560

                                                                       
Query: 361 cagtgtaagcttgtgtttgcctgtgccctgcttggctccccagctgcagtcctcacactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgtaagcttgtgtttgcctgtgccctgcttggctccccagctgcagtcctcacactg 620

                                                
Query: 421 gcctctagatggtacccttgctaagtcaggctttgag 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctctagatggtacccttgctaagtcaggctttgag 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_n16.g1 MSMg01no429_n16.g1 CHROMAT_FILE:
MSMg01no429_n16.g1 PHD_FILE: MSMg01no429_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:28 2005
         (246 letters)



>mm_chr6_72730200_72730845
          Length = 646

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttggccttttttttttttttttttttaattctttaaaaagtattttattttattatta 60
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 506 agttggtcttttttttttttttttttttcattctttaaaaagtattttattttattatta 447

                                                                       
Query: 61  acgttccacacatgctgcaatccaatcgctggagattttctcaaaggtaaagtgaacaca 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acgttccacatatgctgcaatccaatcgctggagattttctcaaaggtaaagtgaacaca 387

                                                                       
Query: 121 tctgatatttcactaaaacttttagaaattattattgcttgtgtgcattaggtgtgggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tctgatatttcactaaaacttttagaaattattattgcttgtgtgcattaggtgtgggga 327

                                                                       
Query: 181 gtggaaagtaccccagagtgtgtatggaagtcagaggacaactttatagacgtggttctt 240
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 gtggaaagtaccccagtgtgtgtatggaagtcagaggacaactttacagacgtggttctt 267

                
Query: 241 ttcca 245
           |||||
Sbjct: 266 ttcca 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)