BAC Information

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BAC

Clone NameMSMg01-431O13
Chromosome6 (Build37)
Map Location 34,794,755 - 34,795,258
singlet/doubletsinglet
Overlap geneAgbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431O13.T7 (MSMg01no431_o13.b1)MSMg01-431O13.TJ (MSMg01no431_o13.g1)
ACCAG524058AG524059
length762786
length of high quality
(start - end)		504 (61 - 564)139 (66 - 204)
definitionCHROMAT_FILE: MSMg01no431_o13.b1 PHD_FILE: MSMg01no431_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:26 2005CHROMAT_FILE: MSMg01no431_o13.g1 PHD_FILE: MSMg01no431_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCCTATATTCCAAAATCCGCGGAATTCTGTATCT
TTGCAGTATTAGGCCATTATCTATTTGTCTAAGTAACATCCTAATCTTCT
GAATCTCTGTAAGGCAAAGGACACTGTCAAGAGGACAAAATGACAGGCTG
CAGACTGGGAAAAGATCTGAACTAAGCCTACATCCAACAGAAGCTTAATG
ATTCTTCCAAGTCTGTGCACATTGGAAATTTCTCCATTCTGTGCCTGATG
ATTCTTCTGATTCTACTCACTGCACCCACAGCCTTCTGCTTTAATTCAGA
CAGTCTTTGTTTTTGTCCCTTGAACTCCTTTGTTTACCTCCTAGCCCGTC
CCCACAACTTTCAGCTCAGTTTTCTCTTTCCTGTCATTCTGCAGCATAAT
TTCAAAAAGGCAAACCAATTATACAACTTTCTTGCAAAAATCTCAGTGTC
CTGAGCTGTTCAATTCCAACCATATGTATTCATCACAAAGCATTTCTGTT
TAGAGAGGTCATTAAAAATGTTATTATTACAAACGAACTTCTAGTTTTGA
GCAACTTTATCACATTTAACTCACATATGAGCCACTCTAAACCAAATTTG
TGATTTTCTGAATGGGCCATGTTAGTCCACTACCTAAATCAGGCCTTCTT
TAAATTTTCATTCAGGCCCCCCTCCCCCTGAAAAAAATTTTCTTCCTTCC
CCGGTTATTAAAATAAAATCCCCACCCCCCCCGTTTTTGTAAACAACCTC
ATATGGGAATTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATGAGGGCAGGGATGTGTGTCGGGTTTGCTGACT
TTGGTACACTCACCACCTGGCACGATGCTCAAAACACCACACAGTAGCTG
AGCGCTGTACGATGTGCTGTGTGGTTGATGGGTGGATGGCTGGGAGGGAG
GAGNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTT
TNNTTTTNTTTTTTTGGTTTTTTTTTTTTTTTTTTTNTTNTNTTTTTTTT
TTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTT
TTNTNNTNNNNTTNTNNNTTTTTTTTTTTTTTTTTTTTTTTNTTTTCCCC
CCCCCTTTTTTTTTCCTTCTCTCTTCTCCCCTTTCTTTCTCTCCTTTCTC
TTTCCCCTTTCCTTTTCCCTCTCTTCCCCCCCTCTTTTCTCCCCTTCCCC
CCCCCCCTTTCCCCTTTTTCCCTTTTTTCCCCTCTTTTTCCCTTTTTTCC
TCTCCTCCTCTTTTTTTCTTTTCCCCTCTTTTTTCCTCTCTTCTTTTCCT
TTCCTCTTCTTTCTCTCTTTCCCCCTCTTTCTTCCCTCTTTCTTCCCTTT
CCCCTCCCCCCCTTTTTTTTTCTTTTTCCTCTTCCCCTTTTTCTTTTCTC
TCCTCTTTCCTCTTTCTCCTCTTTTCTCTCCTCTTTTCCCTCTTTTTCCC
CTTTCCTCTTTTCTTTTTTTCTCTCCCCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_o13.b1 MSMg01no431_o13.b1 CHROMAT_FILE:
MSMg01no431_o13.b1 PHD_FILE: MSMg01no431_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:26 2005
         (504 letters)



>mm_chr6_34794555_34795458
          Length = 904

 Score =  920 bits (476), Expect = 0.0
 Identities = 497/508 (97%), Gaps = 8/508 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggccattatctatttgtctaagtaacatcctaatcttctgaatctctgtaaggcaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggccattatctatttgtctaagtaacatcctaatcttctgaatctctgtaaggcaaagg 260

                                                                       
Query: 61  acactgtcaagaggacaaaatgacaggctgcagactgggaaaagatctgaactaagccta 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgtcaagaggacaaaacgacaggctgcagactgggaaaagatctgaactaagccta 320

                                                                       
Query: 121 catccaacagaagcttaatgattcttccaagtctgtgcacattggaaatttctccattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catccaacagaagcttaatgattcttccaagtctgtgcacattggaaatttctccattct 380

                                                                       
Query: 181 gtgcctgatgattcttctgattctactcactgcacccacagccttctgctttaattcaga 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gtgcctgatgattcttctgattctactcactgtacccacagccttctgctttaattcaga 440

                                                                       
Query: 241 cagtctttgttttt----gtcccttgaactcctttgtttacctcctagcccgtccccaca 296
           |||||||||    |    |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cagtctttg----tccgcgtcccttgaactccttcgtttacctcctagcccgtccccaca 496

                                                                       
Query: 297 actttcagctcagttttctctttcctgtcattctgcagcataatttcaaaaaggcaaacc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actttcagctcagttttctctttcctgtcattctgcagcataatttcaaaaaggcaaacc 556

                                                                       
Query: 357 aattatacaactttcttgcaaaaatctcagtgtcctgagctgttcaattccaaccatatg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aattatacaactttcttgcaaaaatctcagtgtcctgagctgttcaattccaaccatatg 616

                                                                       
Query: 417 tattcatcacaaagcatttctgtttagagaggtcattaaaaatgttattattacaaacga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tattcatcacaaagcatttctgtttagagaggtcattaaaaatgttattattacaaacga 676

                                       
Query: 477 acttctagttttgagcaactttatcaca 504
           ||||||||||||||||||||||||||||
Sbjct: 677 acttctagttttgagcaactttatcaca 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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