BAC Information

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BAC

Clone NameMSMg01-432M06
Chromosome6 (Build37)
Map Location 89,272,339 - 89,439,762
singlet/doubletdoublet
Overlap genePlxna1, Chchd6
Upstream geneEefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik
Downstream geneTxnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432M06.T7 (MSMg01no432_m06.b1)MSMg01-432M06.TJ (MSMg01no432_m06.g1)
ACCAG524706AG524707
length863810
length of high quality
(start - end)
183 (69 - 251)368 (68 - 435)
definitionCHROMAT_FILE: MSMg01no432_m06.b1 PHD_FILE: MSMg01no432_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:37 2005CHROMAT_FILE: MSMg01no432_m06.g1 PHD_FILE: MSMg01no432_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,272,339 - 89,272,521)(89,439,395 - 89,439,762)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCTA
CAGGCTTGCGTAGAGGGGTTGTGGCAGGATCCAGGGCTGGAAACTGGGAA
GGTCCAGGGTGATCCTGACACTGTAAGGCCCGGGCCCTGGCAGTCCCACC
CCTATGGTAGTCGCACCAATTGCTCTTCCAGGTATGGCGCACATCTGAGT
CGTGGATCTGATGCTTGTCGGCCTGCTCATCTAAGAAGTCAAACATGTAC
TTGATGGCCAGAGGTAGGGCTGAGCCACGGTGCGCCGTGCTGAAGATGGT
CTCGAACAGGTCATCCTTTTATTTTTGTAGTGTTCCCTGCAGGTTGAGCC
ATTGTTTTTCCGCGCGCTCCTAGTCTCTACCTCTCTCATGATCTGCATAG
GCCTGCTTCACCCCCCGTATTTTGTAATGGTCTTTTGCTTCTTATTTTCT
TCCTTGCATTCTTCGTGTTCCCTCATCCCGTTTTTCGCTTATCCCCTCTA
CCATGCTCTTATTATATTTCGCATTATCATCTTTCTAATCCATACTCCGC
TTCTCCTCGTCTCCCCATCTATTTATATTATCCCATCATCCCCTTCTTTG
GCATCCCTTTATTCTCTCTCTTCTTTTCCGCTCCTCCTTCCTATTTTTCT
CCTTTATTGATCTTTATATTTCCTCTTTTCTTCCTTTTTATCACTTCTTC
CCTCCCCCTCCTTTTCCTTCCCCTTTTATCCTTTTCCATACTTCTCCTTA
TAGCAATATTTCCCGTTCTTCTCTTACACTATGTCCCAATTCTTTCGCAT
ATGCTTATATTGCGTCCTCCTCCTTTTATTTCTTTTTTTCCCCTTTTTCT
CCTTCCATTCTAN
GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGGAAGGTTAACCACTAGCAATCTTTACTCCC
CAGTCCCTTATCATAAAAGAAAGTATGTTTGGCTTAGTGTCTTAAAGGGA
GGATGCCACGGAGTTGAGGTGAGCAATGTTGAGGACTATAAGGGACCCAG
CTCTGTGGTGTTGGTACTGACACTGTGTGTGGTGTGGGTTCCACAGGACA
ATGTTAAAATGTAAGGCCAATGCTTTGCAGAATACATACAATATTTGACC
ACCAGGTGTTAGTAAGAATAAGAAAAAATGAAGGGAAAAGAACTTCTGAC
TAGTGAGGTCTCAGGATGCCCAGGCGTTCCCATTTTTTTAAATCAAGAAC
AGAGAGAACAAGTGAAGCTCCAAGAGGTGAGGCACTTTATCCAATACCAC
ACATTTACTGATGTTCAGATTTGGGATTCATAAACAGTCCCCTTTTGACC
CTGAGAATTCCCTGGCATGTCCATGTGTATGCGGCCCTACTTCTGGTTCC
CTAAGTAGACTTCTTGCTGCCTTCACTCTTTCTTTTCCTCTCGTTCTGCT
CCCGGTCTTGTCCCTTCCTTTTTTAATTCCTCCTTTCCTGTGCGTCCCTT
CTTTTTATTCTTTGCTCCTTTCTCCTTGTCTCCCTTCCTTATCTCTTTCC
ATTTCTTTTTCTTTTTTCCCCCCTTTCCTTTTTCCTTTTCATCTCTTTCT
CCTTTCTTTGATCTCGACTTGCTTGAAATTTCCTATAATACCCTTACTAT
CTTTTCGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_m06.b1 MSMg01no432_m06.b1 CHROMAT_FILE:
MSMg01no432_m06.b1 PHD_FILE: MSMg01no432_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:37 2005
         (183 letters)



>mm_chr6_89272139_89272721
          Length = 583

 Score =  346 bits (179), Expect = e-100
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtggcaggatccagggctggaaactgggaaggtccagggtgatcctgacactgtaagg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttgtggcaggatccagggctggaaactgggaaggtcctgggtgatcctgacactgtaagg 260

                                                                       
Query: 61  cccgggccctggcagtcccacccctatggtagtcgcaccaattgctcttccaggtatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgggccctggcagtcccacccctatggtagtcgcaccaattgctcttccaggtatggc 320

                                                                       
Query: 121 gcacatctgagtcgtggatctgatgcttgtcggcctgctcatctaagaagtcaaacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacatctgagtcgtggatctgatgcttgtcggcctgctcatctaagaagtcaaacatgt 380

              
Query: 181 act 183
           |||
Sbjct: 381 act 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no432_m06.g1 MSMg01no432_m06.g1 CHROMAT_FILE:
MSMg01no432_m06.g1 PHD_FILE: MSMg01no432_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:37 2005
         (368 letters)



>mm_chr6_89439195_89439962
          Length = 768

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaaggttaaccactagcaatctttactccccagtcccttatcataaaagaaagtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaggaaggttaaccactagcaatctttactccccagtcccttatcataaaagaaagtatg 509

                                                                       
Query: 61  tttggcttagtgtcttaaagggaggatgccacggagttgaggtgagcaatgttgaggact 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 508 tttggcttagtgtcttaaagggaggatgccatggagttgaggtgagcaatgttgaggact 449

                                                                       
Query: 121 ataagggacccagctctgtggtgttggtactgacactgtgtgtggtgtgggttccacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ataagggacccagctctgtggtgttggtactgacactgtgtgtggtgtgggttccacagg 389

                                                                       
Query: 181 acaatgttaaaatgtaaggccaatgctttgcagaatacatacaatatttgaccaccaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acaatgttaaaatgtaaggccaatgctttgcagaatacatacaatatttgaccaccaggt 329

                                                                       
Query: 241 gttagtaagaataagaaaaaatgaagggaaaagaacttctgactagtgaggtctcaggat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gttagtaagaaaaagaaaaaatgaagggaaaagaacttctgactagtgaggtctcaggat 269

                                                                       
Query: 301 gcccaggcgttcccatttttttaaatcaagaacagagagaacaagtgaagctccaagagg 360
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 268 gccaaggcgttcccatttttttaaatcaagaacagagagaaaaagtgaagctccaagagg 209

                   
Query: 361 tgaggcac 368
           ||||||||
Sbjct: 208 tgaggcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)