BAC Information

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BAC

Clone NameMSMg01-432M20
Chromosome6 (Build37)
Map Location 139,210,371 - 139,210,683
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo3, Igbp1b, EG668196
Downstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432M20.T7 (MSMg01no432_m20.b1)MSMg01-432M20.TJ (MSMg01no432_m20.g1)
ACCAG524734AG524735
length857799
length of high quality
(start - end)
317 (43 - 359)30 (75 - 104)
definitionCHROMAT_FILE: MSMg01no432_m20.b1 PHD_FILE: MSMg01no432_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:40 2005CHROMAT_FILE: MSMg01no432_m20.g1 PHD_FILE: MSMg01no432_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCCGTTGTCACGTTCTACTCAAGTACATAATAAAATATTTTATGTAA
ATTTATATTAAAAAGTACTAAATGATGATTGTATTCACACTATTCATTTT
TAACACATGGATATAATGTCTCAAATCTTTGGTTGGGTTTTTATTTTGAT
CAGTATATCTTTGGAGTCCAGACAAAGCTTGGAAAGAAAAGATGGGCTTG
GACCCCTAAAGACTCTCCATCGAACCCACCATAGAGTCTACCTGCATAGG
AAGTTGTAGATTTACCAAATGACTTTGATGAACATAGAAATATTAGAAAT
TTACAGTATGTATGGGTAACTTTGATGCACGACATTGATGTAACCCAGAC
TCCCAATTTTTGGAATGTGGCATACTTATTTTTAACGGTTTTATCATCCT
TTAGGATACACAATATAATTTTTGAGTAAAATTATTTTGGAGGTTATCGT
TTCATAATTTTATTATCTCTTGATCATCGCGCGTTCGTATCTCCCCTTTC
TTAGCTCTCCCTTTCTATACATTTTTTCCCCTTCTCCTCTATATTTCCCT
TCTCCTGTTTCGCTCTTTTTCCTCCCCCCTTCTCTCCTGTTAGTTCCCCT
TTCTCTTATTCTTTTTTTTCCCTTTTTTCCCTTTCTCTCCTTCTCCCCGC
TCCTTCCTATTCTTCCCCTTTTTCCCCTTCCCTTCTTCCTCTTTTTTTCA
CTCTTATCCTTTTCTCTCTTCATTATTATACTTTTCTATTTTCTTCTCTC
TATTCCCTTCTCCCCCCTCTTATCACATCTTTTCGCCTCTTTTTTCCCCC
TTTTTTT
NGGGTAAGCCTGGNNGNCGCCTGGTTCTCGACTTTANGTGACCTATANAA
NTATCCGCGNAATTCTANAAAGNCTTTAATTTCTTTATTTCTTTCCTGAC
CCANANATCATTGTTCATTTTTCATGANTGTGGANGCTTTCTAACTTCTG
NTNNTTTTNANGNNCCAATTTATTTCTGTTTTTTNNNNNNNNNCNAATNN
NNNNNNNNTTTTTNNTTTATNNTTTTNNATTTTTTTTTTTCTAAATGTTG
TTGTTGAGGGGTTTTTTTTGTTTTGTTGTGTTTGTGTTTTTGTTTTTGTT
GTTTTTTTTTTGTGTGTTGTTTTTGTGTTTTGTGTTTGTTTTTGTGTTTG
TGTTTTTTTTGTTAGGGGTGGCACCCCCCTCCCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNCNNNNNNNNNNCNNNNNNNNNN
NNNNTNNNNNNCNNNNNNNCCCCCTCCCTTCTCCTTTCTTTTTTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_m20.b1 MSMg01no432_m20.b1 CHROMAT_FILE:
MSMg01no432_m20.b1 PHD_FILE: MSMg01no432_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:40 2005
         (317 letters)



>mm_chr6_139210167_139210883
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatccgttgtcacgttctactcaagtacataataaaatattttatgtaaatttat 64
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatccgttgtgacgttccactcaagtacataataaaatattttatgtaaatttat 264

                                                                       
Query: 65  attaaaaagtactaaatgatgattgtattcacactattcatttttaacacatggatataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaaaagtactaaatgatgattgtattcacactattcatttttaacacatggatataa 324

                                                                       
Query: 125 tgtctcaaatctttggttgggtttttattttgatcagtatatctttggagtccagacaaa 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tgtctcaaatctttggttgggtttttattgtgatcagtatatctttggagtccagacaaa 384

                                                                       
Query: 185 gcttggaaagaaaagatgggcttggacccctaaagactctccatcgaacccaccatagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttggaaagaaaagatgggcttggacccctaaagactctccatcgaacccaccatagag 444

                                                                       
Query: 245 tctacctgcataggaagttgtagatttaccaaatgactttgatgaacatagaaatattag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctacctgcataggaagttgtagatttaccaaatgactttgatgaacatagaaatattag 504

                        
Query: 305 aaatttacagtat 317
           |||||||||||||
Sbjct: 505 aaatttacagtat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)