BAC Information

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BAC

Clone NameMSMg01-433F08
Chromosome6 (Build37)
Map Location 148,046,035 - 148,046,434
singlet/doubletsinglet
Overlap geneMlstd1
Upstream geneKlhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
Downstream geneErgic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433F08.T7 (MSMg01no433_f08.b1)MSMg01-433F08.TJ (MSMg01no433_f08.g1)
ACCAG525140AG525141
length771822
length of high quality
(start - end)
400 (67 - 466)138 (72 - 209)
definitionCHROMAT_FILE: MSMg01no433_f08.b1 PHD_FILE: MSMg01no433_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:23 2005CHROMAT_FILE: MSMg01no433_f08.g1 PHD_FILE: MSMg01no433_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTTAATACCTGTTTTATTATCAAATTAATGTAGTGATAACTATTTTAA
TAAGGAAATGTTTTTTGTTAGCCTCTTCTTTTTAAAACAAAACACAAAGC
TTCAATTTTTCTCTTTAAACATCGATTACAAATTCCAAGACAAAGCATAA
AAGCAGATGGTACAGAAGGTTTTGTTTTGGTGACATATAATCAGACCACA
TGAATGAACTCCCTACTCAGCCCACAAGTGATAATGGACCCTGATTAAAG
GGCCTTCCCTCTGTTTTTTGTTAGATACATACTAAACTTTTCTGAAAGAT
GCTAATATGATTATGTTTTTAAGTCTCCTAAGACAAAATCAGAAGTTTTT
GTTGGAACACTACATAATCTATAAATCACCCAAAGCCATAGAAATATCTT
TAAAAACATGCAGGGACATTTGGTAGTTATTTACTATAGCACATGCGTCG
ACGGCTGTATCAACCACTGAGACACAACGTGAGGCCCCACATCCCTAAAA
CTGGTTCACCTGGTGCCTTGGGAACCTAATGTTTCTTTTCAAGACACCAC
CATCTCTTTATAATTCTTTCCCAACTTTTCTTTCTATCCCAACCTCGCTT
CTCGTGCTTTTATTTTTTTCCCCCCCCCTCACCACCATCCTTTTTCGTGG
TCTGCTCTATCTCTCCAAAAACCCTCGTCTTTCTTTATCCTTCACCGCTG
CCCTCTCCTTCCTCCTCTTCN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATCTTATAGGCTACTGAGAGTTATTGA
CTTTAGCTTGTTCCCATACAAAGTGTGCTTCTCTAACACTAACTGGGGAC
ATGATTGCTCCAAAGTATAGTTGAGGGGAGAATTTTTATTATAGATAGGA
GGAAGAGTGCCCNGCCCGATCCCCTTCCTAGAGTATCCTACACGCACTGG
ACGTTGCGGATCCGATTCCTGGCCCTGGTTGCTCCTAGGCCTGCCCCTTC
CCGCTTTCCTGTTTCTCGCGCCGCCGCTCCCGCCGCCTGTGCGCCCGGTT
CCCCTCTTCCCCTTCCCTTCGCGTTTTCTCCTTTCGCCTAGTGCGTTCCG
CTCCGCCGTTCTCGCCTTGCGTCCATCTTTCCCTTTTTCTGCTCTCGCTT
TTCCCCCTTTTCGCCGCTCCCCTCCCCCCTTGCTTTCCCCTTTCCCCTTT
TTTCCCCCTTTCCCTTCCTCCCCCCTTTCCCCCCCTTGCGCCCTTTCCGC
CTTTCGTTCCTTTCCCCTTTTTCCCCGTTCTGTCCCCCTCTTTCCGCTTG
TCCTTTCCCTTTTCCCCCCTTTCCCCCTCTTCGCCTTCCTCTTGTGTGTT
CCCCCTCCCTACTCCCCTGCCTTCCCCCCGACCTCCTCTCTTCTCTCTCC
TGCCTTCCCTTTTCTCCCTTCCATTCTTCCTTCGTCGTCCCCTACCGTTT
CCCCTCTTCCCGATGTCTCCCCTGTTCCTCTCTACCCCTTTCCTCTCCCC
CTTTTTCCTATTTCCACTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_f08.b1 MSMg01no433_f08.b1 CHROMAT_FILE:
MSMg01no433_f08.b1 PHD_FILE: MSMg01no433_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:23 2005
         (400 letters)



>mm_chr6_148045835_148046634
          Length = 800

 Score =  766 bits (396), Expect = 0.0
 Identities = 399/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattatcaaattaatgtagtgataactattttaataaggaaatgttttttgttagcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattatcaaattaatgtagtgataactattttaataaggaaatgttttttgttagcctct 260

                                                                       
Query: 61  tctttttaaaacaaaacacaaagcttcaatttttctctttaaacatcgattacaaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttttaaaacaaaacacaaagcttcaatttttctctttaaacatcgattacaaattcc 320

                                                                       
Query: 121 aagacaaagcataaaagcagatggtacagaaggttttgttttggtgacatataatcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacaaagcataaaagcagatggtacagaaggttttgttttggtgacatataatcagac 380

                                                                       
Query: 181 cacatgaatgaactccctactcagcccacaagtgataatggaccctgattaaagggcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatgaatgaactccctactcagcccacaagtgataatggaccctgattaaagggcctt 440

                                                                       
Query: 241 ccctctgttttttgttagatacatactaaacttttctgaaagatgctaatatgattatgt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctctggtttttgttagatacatactaaacttttctgaaagatgctaatatgattatgt 500

                                                                       
Query: 301 ttttaagtctcctaagacaaaatcagaagtttttgttggaacactacataatctataaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttaagtctcctaagacaaaatcagaagtttttgttggaacactacataatctataaat 560

                                                   
Query: 361 cacccaaagccatagaaatatctttaaaaacatgcaggga 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacccaaagccatagaaatatctttaaaaacatgcaggga 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)