BAC Information

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BAC

Clone NameMSMg01-433L12
Chromosome6 (Build37)
Map Location 110,823,233 - 110,823,576
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433L12.T7 (MSMg01no433_l12.b1)MSMg01-433L12.TJ (MSMg01no433_l12.g1)
ACCAG525436AG525437
length782845
length of high quality
(start - end)
344 (64 - 407)38 (68 - 105)
definitionCHROMAT_FILE: MSMg01no433_l12.b1 PHD_FILE: MSMg01no433_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:53 2005CHROMAT_FILE: MSMg01no433_l12.g1 PHD_FILE: MSMg01no433_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
TCTTCCCGATTACAAGCAAATGCTTTTACCCACTGAACCATCTTACCATC
CTAAGGCTAGCTTCTTGAAAACATCTCATGAACAAAACTCCACAAACAAC
TCATATTTGTGCATCTGGTTTTAAGCTGCAGACTCTTTTTGGAACATTGA
TTGTTGCATATCACATAGAATTTGTCTGTGACCACTGCTGGTTTTTCCTA
GGTTGCATTTTGCTGAGGCTAATGTCCTGCTTGGAGCACATTCTTAGAAT
ATTATTTATTATAAAGTATAAGGTAAATTTCAAGTGGGTTGTCTCGAGCA
GTCCCCGCTTGGAAGATGAATTTATGGGGCAGGCCTATCTCAGAAAAGTT
GCCTAGCCATTTCTGTAGTATCTGTGACACATTAATCAAGTTTATCTAAG
TGGGAGCACTCACAATGTGTTCTCCAGCAGTAAACTAGAAAATTTTTAAC
TTGCTTTCTTTCTTCATGCTTGATTAACACCTCGATAATACCACTGCTTC
TCATAAGCGTCTCATAAACACACTGCTCGCACATAACAAATTTACCTCGC
TTCGCCATACAAACCATTATTTCCTCTGCCCAATAATAACATCTTTCTAT
ATCCTGCCCCCTCCGTTTTTCATCTAAACACCCCCCCCCCTCCCCATCGA
CCTTCATGTTTCTTTTTCTTCTACTTCCTCCCTCCTTAAACAATCTATGT
TTATCACCCTTCTTTCCTCTTCCTCCACATCN
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTATGAATAATTATTGAGTGTATGAGTGTGTG
TGTGCCCTTTTTCCCCTTCCTCCCTCCTTTCCTCTTCTTTCCCCTTCTCC
CTTTTCTCCCTCTGCGGGGCCTCTCCCCTTCTCGCTTTCCGTTTCCCTTT
TCCCCTCTCCCTTTCCTGCCTTCGTCTTCTCGCGCTTCCCTCCTCCCTCC
TCGCCTGTTGGTTCCTCGGTCCTCCCGTCGTCTTCCCTCCGTTGCCGCGG
CCCCTTCGTCCCTTTGTTTTTTTTTCGGCGGCGGTGCTGCCTCTTCCTTT
CCGCCCGTTTCCCTCCCTTTCCCTTTCCTTTCCTTTTTGTCCGTTTCCCG
TTGTGCCTGGCCCTCGTCGTGTTCCCCCCCCCCCCCCTTTGGTGCCCGTT
TTCTGTCTTTCCCCCTTTTCCCCTTTTTTCTGCCTTCCGCTCGCTGCCTC
TTCTCTTCTCGTTCCCCCTTTTTTCCGCCCTTCCCGTTTCCTCCCCTCTT
TTCCCCCCGTTTCCTCTGTTTCCCCCTTTTCCGTCCTTTCTCCTTTTTTC
CCCTTCCTCTTCCCGCTTGTCCGCTCTGTGCGTTTGCCCTATCCCCCCTT
TTCCCCCTCCCCCTCTTTCTTCTTCTTCGTCCGCCCCCGTCTACTGCCGC
CCCGTACCTCCCAGCCTCTACGCTCTTACCCTTCACCCTTCCCATCTCCT
CCCGCGCCTTTCCCTCGTCTTCCTCTCCGTTCCCCTCTTTCCTATTCCTC
GCTTTCCCTTCTTCCATTTCTCTTCGCCCTTTCCTTTCCCCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_l12.b1 MSMg01no433_l12.b1 CHROMAT_FILE:
MSMg01no433_l12.b1 PHD_FILE: MSMg01no433_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:53 2005
         (344 letters)



>mm_chr6_110823033_110823776
          Length = 744

 Score =  619 bits (320), Expect = 0.0
 Identities = 338/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcaaatgcttttacccactgaaccatcttaccatcctaaggctagcttcttgaaaaca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aagcaaatgcttttacccacggaaccatcttaccatcctaaggctagcttcttgaaaaca 485

                                                                       
Query: 61  tctcatgaacaaaactccacaaacaactcatatttgtgcatctggttttaagctgcagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tctcatgaacaaaactccacaaacaactcatatttgtgcatctggttttaagctgcagac 425

                                                                       
Query: 121 tctttttggaacattgattgttgcatatcacatagaatttgtctgtgaccactgctggtt 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctttttggaacattgattattgcatatcacatagaatttgtctgtgaccactgctggtt 365

                                                                       
Query: 181 tttcctaggttgcattttgctgaggctaatgtcctgcttggagcacattcttagaatatt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 364 tttcctaggttgcattttgctgaggctaatgtcctacttggagcacattcttagaatatt 305

                                                                       
Query: 241 atttattataaagtataaggtaaatttcaagtgggttgtctcgagcagtccccgcttgga 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atttatgacaaagtataaggtaaatttcaagtgggttgtctcgagcagtccccgcttgga 245

                                                       
Query: 301 agatgaatttatggggcaggcctatctcagaaaagttgcctagc 344
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 agatgaatttatgggacaggcctatctcagaaaagttgcctagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)