BAC Information

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BAC

Clone NameMSMg01-433P12
Chromosome6 (Build37)
Map Location 127,511,377 - 127,511,785
singlet/doubletsinglet
Overlap genenone
Upstream geneKcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11
Downstream geneEfcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433P12.T7 (MSMg01no433_p12.b1)MSMg01-433P12.TJ (MSMg01no433_p12.g1)
ACCAG525627AG525628
length800765
length of high quality
(start - end)
244 (60 - 303)408 (65 - 472)
definitionCHROMAT_FILE: MSMg01no433_p12.b1 PHD_FILE: MSMg01no433_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:13 2005CHROMAT_FILE: MSMg01no433_p12.g1 PHD_FILE: MSMg01no433_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGGCGCTAAACGACTCCTATTTCGGAGAGGATCCGCGGAATTCTT
TTCTGCCTGTCAGCTCAGTTGGCCATGGTTCTTCCCCCCGCCCCCCCACC
TTCCCCTGGAGAGTCACTAGTCTATAACATGCCAGGTGGGGAAGTACCCA
CAGGGACCAGCAGTTCTCAGACCAGACAGACAGCACATCAGAATTCCCTG
GGAGCTTTCTGATCATAAATGGCCGAGTCCCACTGTAGATTCTGAGGCAG
TGGTATCTTGAGCTGCCCAAGAGCTTATATTTCTTTTAAGCCCCCCCAGG
GGAGCCTGATTCTGGCGGTCCAGGGCACATACTCTGAGCACCACTGCCCT
TTACCCTCTTATGCCCTTAACCCCAGCTTGTTTAGTGCCGATAACATAGA
GCATCACGCGCCGCGACAGCTTGATAGAAATGCTTCCTGGTACACCTCCG
TTCTGACTCCCTGTTCTCCATTCGGCCCGTGCATACTCCTGAATCGTCCC
TCCTCCCCCCTTCTTTTTTCTCCCCCCCTCTTTTCCCCTTTTTTTTCTTC
TCTCTTCTAATCCATCTTCTATTCTCTACCTCTTCTCTCTTTACCTCCTT
CTCCACTCTTCTCCATCCTATTCTTTTTTTCTCACCTCACTTCCTTTTCC
TTTCTTCTCTCTTCCTGCCCTTCTCATCTTTCTTCTTCTTTTCCGCCCCC
CCACCCACATCCCCCTTCCTCTATACTTCCCTTTCCACTCCCCCGCCTCT
TCAAATCATGCTTCTTTTCTTCTCCGCTTCTCTTCTCTTCCTGCCCTTCT

TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGACAGCTGCGAGCCAGAAGGCAGGGGGACAACTC
AGACAGCCGCACTGGACGCCCCTGCAGGTAATCGGAGGAAGGTCTTGGGA
GGCTTCGCCCCAAACCCTCTGCTGGGCAGCAGAGAACGCACTTCCTGCAG
ACCAGCAAAGTACAAGGAGAGGCTGGCCTGGACGGCATGCACCCTGGGAC
AAGCATCCCAGCCTTGGCTTCCCCAGGCCTGGTTAGGCCCTCTGTCCTGC
TCCCTAAAAGGGACTATAAAAGCTTAGGAGCACCAGGGTTTAGAAAGTGC
CCCCATCCCCTCGGACCCTTCAGTCACACCCAGACTGTTTTACAGAGGAA
ACTAAGACTTATTGGTGAAGTGACTAGAAATTCACACTGCTGGACAGCAG
GGGGAGCTGCTGGGAGCCGCTGGCACGTGGGCCCAGCACAGGGGTAAGAA
TTGCTACCTCACAGGGAAAATAAACTCAGAGAGACAGCTTAAAAAATAAA
AAAAGACCCAAAAATTTCCCCTAACAAAAGGATAAACAGAGTTGGAGGCA
TCCCTGGCTTGTTTCTCCCCCCCCGATCCCCTTTTTCTTCTGCAACCTCT
CTCTTTCACCTCAGCCTCCCTTCCTCCCTCTGCTCTCCTTACTCTCCCCT
CCTTTCCCCTCTTCCTTTACCTCCCTTTCCTTCTTCCTTTCCTTTCCCCT
TTTCTTTTCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_p12.g1 MSMg01no433_p12.g1 CHROMAT_FILE:
MSMg01no433_p12.g1 PHD_FILE: MSMg01no433_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:13 2005
         (408 letters)



>mm_chr6_127511177_127511985
          Length = 809

 Score =  721 bits (373), Expect = 0.0
 Identities = 400/409 (97%), Gaps = 1/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacagctgcgagccagaaggcagggggacaactcagacagccgcactggacgcccctg 60
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctgacagctgcgagtcagaaggcagggggacaactcggacagccgcactggacgcccctg 260

                                                                       
Query: 61  caggtaatcggaggaaggtcttgggaggcttcgccccaaaccctctgctgggcagcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtaatcggaggaaggtcttgggaggcttcgccccaaaccctctgctgggcagcagag 320

                                                                       
Query: 121 aacgcacttcctgcagaccagcaaagtacaaggagaggctggcctggacggcatgcaccc 180
           |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||
Sbjct: 321 aacgcacttcctgcagaccagcaaaacacaaggagaggctggcctggactgcatgcaccc 380

                                                                       
Query: 181 tgggacaagcatcccagccttggcttccccaggcctggttaggccctctgtcctgctccc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 381 tgggacaagcatcccagccttggcttccccaggcctggttaggccctctgccctgcaccc 440

                                                                       
Query: 241 taaaagggactataaaagcttaggagcaccagggtttagaaagtgcccccatcccctcgg 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 taaaagggactataaaagcttaggagcaccagggtttagaaagagcccccatcccctcgg 500

                                                                       
Query: 301 acccttcagtcacacccagactgttttacagaggaaactaagactt-attggtgaagtga 359
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 acccttcagtcacacccagactgttttacagaggaaactaagactttattggtgaagtga 560

                                                            
Query: 360 ctagaaattcacactgctggacagcagggggagctgctgggagccgctg 408
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagaaattcacactgctggacagcagggggagctgctgggagccgctg 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)