Query= MSMg01no434_a21.b1 MSMg01no434_a21.b1 CHROMAT_FILE:
MSMg01no434_a21.b1 PHD_FILE: MSMg01no434_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:20 2005
(498 letters)
>mm_chr6_110781301_110782198
Length = 898
Score = 948 bits (490), Expect = 0.0
Identities = 493/494 (99%)
Strand = Plus / Plus
Query: 5 gaattcaataaaatcctatttacctcataatcctctttttatttgatataatttggtggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataaaatcctatttacctcataatcctctttttatttgatataatttggtggg 264
Query: 65 tttatgtttctggaaacaagaaggatcttatctgaatcacatgctcagaaatgaaggtag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttatgtttctggaaacaagaaggatcttatctgaatcacatgctcagaaatgaaggtag 324
Query: 125 ttgtcacataggggcaattcctgttgtggtagacagcccccatgttacttcctgttctat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtcacataggggcaattcctgttgtggtagacagcccccatgttacttcctgttctat 384
Query: 185 ttgactattgaataacctaaaggtagtagggtaaggatagatgtaaatggtcaattgtag 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgactgttgaataacctaaaggtagtagggtaaggatagatgtaaatggtcaattgtag 444
Query: 245 gttttcagagtttatgctgatgcttccatggaagttaaggcagcataagcttgcataata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttttcagagtttatgctgatgcttccatggaagttaaggcagcataagcttgcataata 504
Query: 305 gataattctagaaatctctagctttcaacagtggacacttacactctaattcacattgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gataattctagaaatctctagctttcaacagtggacacttacactctaattcacattgaa 564
Query: 365 caacacattgtaggcatacagcgtgacaaactctgattcacacagttattcatctgtaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caacacattgtaggcatacagcgtgacaaactctgattcacacagttattcatctgtaat 624
Query: 425 gtctgaccctgaatgctgcctggaagctgctggaaagataaagaccagaagcaagaccac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctgaccctgaatgctgcctggaagctgctggaaagataaagaccagaagcaagaccac 684
Query: 485 atggattccaattg 498
||||||||||||||
Sbjct: 685 atggattccaattg 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_a21.g1 MSMg01no434_a21.g1 CHROMAT_FILE:
MSMg01no434_a21.g1 PHD_FILE: MSMg01no434_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:20 2005
(460 letters)
>mm_chr6_110939105_110939964
Length = 860
Score = 816 bits (422), Expect = 0.0
Identities = 458/486 (94%), Gaps = 26/486 (5%)
Strand = Plus / Minus
Query: 1 aggtctctagaattcatgtaaaagttagacacagtggcatgtaccaggcaggactcaggg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aggtctctagcattcatgtaaaagttagacacagtggcatgtaccaggcaggactcaggg 574
Query: 61 aacaggacagagaaaggtaaataccaaaggattgctggccagctaatctggctgaaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aacaggacagagaaaggtaaataccaaaggattgctggccagctaatctggctgaaaagt 514
Query: 121 tacactctaagttcagtgagaaaccctgtctcaaaagacctctggctgcacattgataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tacactctaagttcagtgagaaaccctgtctcaaaagacctctggctgcacattgataaa 454
Query: 181 cacaggtgtgcctgcacataaatatgcatacatcagacacacattttgtcataacaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cacaggtgtgcctgcacataaatatgcatacatcagacacacattttgtcataacaaaat 394
Query: 241 ttaaaactaaaagacaaatttcaaaaagaaaacagtatgggattcctaagtgtgtaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttaaaactaaaagacaaatttcaaaaagaaaacagtatgggattcctaagtgtgtaaata 334
Query: 301 aatgggtctcagaaacaatgtgtgtgtc------------------------tgtgtgtg 336
|||||||||||||||||||||||||||| ||||||||
Sbjct: 333 aatgggtctcagaaacaatgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 274
Query: 337 tgtgtgtgtgc--gaagcgtgtgcattttgggggcacattttttcctgtttgttttttcc 394
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgtgtgtgtgcgagaagcgtgcgcattttgggggcacattttttcctgtttgttttttcc 214
Query: 395 tagtctgaagtattagttttattgttattcgtctgaaccctgtttgttttctaatgagag 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tagtctgaagtattagttttattgttattcgtctgaaccctgtttgttttctaatgagag 154
Query: 455 tcaaaa 460
||||||
Sbjct: 153 tcaaaa 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
