BAC Information

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BAC

Clone NameMSMg01-438L01
Chromosome6 (Build37)
Map Location 117,599,767 - 117,600,170
singlet/doubletsinglet
Overlap genenone
Upstream geneRassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438L01.T7 (MSMg01no438_l01.b1)MSMg01-438L01.TJ (MSMg01no438_l01.g1)
ACCAG529225AG529226
length785865
length of high quality
(start - end)
407 (42 - 448)---
definitionCHROMAT_FILE: MSMg01no438_l01.b1 PHD_FILE: MSMg01no438_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:34 2005CHROMAT_FILE: MSMg01no438_l01.g1 PHD_FILE: MSMg01no438_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCA
CTATGTATATCTCGGCCTTGAACTTGGGAGTCATCCTCCAAGTGCTGGGG
TTATAATGTGCACCACGGTGCATGGAAGATTCCACATATTTAGGTATTGT
ATCTTGGTGTAATTTATTCAGATAGTTAGTCCACCCTACTGCCAAAGATG
GAGATGCCATCATTGGAATTTCCCACAAACCACCACCATCTGTCTTCCTT
CCCCTCCTCCTCCCTCCTGCTTCCTATTTCTTCCTCCTTCTCTCCTTTTC
CTTTCCTTATTTTATTCCCTCCCTTTTGCTTAGAAGAATGAGGAAAAATC
AGCCTCACATAATTAGCTGAAAGCTCTCATTCTTAGGAGAACACAAGAAA
AAAATATGACCAGTGGCCCTCGGCTATCTGCAACAATCTGATGACACGTA
TGAAACAGGCCCTTGATTTGTACTTGAAATACTCTTTAATAATGAGAGAA
TCTACTTTTGATGTGCTGATCCTTACAGGAGTCCTCTGTTCTCTCCTAGG
TAAGATTTGTTGGTTGTTGTTTTACTTTGTCACTACTGTTTAGCGGGTAT
TATTTTCGACCTTTATGTTTCTTCATTATTTCACTTTGTTTTGTTTGTAT
TTATCCTTCATCCGGGTTTTCACTCCCATCTTTTTCTTTTTTTTCTTCTT
TCCTCTTACTTATCTTCTCCTCTCTTTCATCTTCCAATCTTTTTGTTTAT
TCATTCTGACTTTATTTGTCTAACAAATTATTTGT
AGTGCGAGGCCTGGAGGACGCCTGGTCTTCGTTACCCGCNGAACTANAGA
AGGATCTTTCGNNCAGCAGGGAGAAGNNNANAANGGCCTCTNNAAGNCCG
GGGNNCGGNCCACTTAGCCCCCTCTCATTGGAAAACATTTCTTTATGACC
GGTAGATTTTGGGTAGGAGTTACGGCCTTGATCTATTACATTGTCTGTAT
ATTGTTTACGAGATCTGGATATAGAGACTCCCTCTGCCAGCTCCGTGTCT
TTTTTCCCCCGAGTGAATCACCACCTTCGCCGGCTTGCCCTTGCCCGCCG
CCCACCCTCCCCCCGCTTTTTTTTTTTTCGCCAAAACCCCCACAGCCATC
GCACCCCCTTTTTTTCCCCCCCCTCTCTCTTTCTGATTTCTCCTTCCTCT
TCTCCCCTTCCCCTTTCCCCCCCCCCCCCCCCCTCTTTTTCCCCACCCCT
CCCCATCATCCCCCCTCTCCTTCCTCCCCACGCCCCCTTTTCTCCTTGCC
CATTTACGTTATCCCCACTCTCCCCATTCCCCTCTTCTGTCCCTCCCTCC
ATTCCGCCCCTTTTCTCTTCCCCTCCAATTTCGTCTTTTCTCCCTCCTCT
CCTTTTGCCCCGTAAACTCCACTCATTCGCCTCTCGGTCCCTTTGTTCCC
CCCCTCACCCCCATCTCCTCCAAGCCATTTATCCTCCCATCAATCCACGT
CCATCTATCCCCCTCCCTCACCGCACCCGCGCGCCCCCTCCCCGTTTATT
CCTTCTTCCCAGTTCCACGCCGCTCCGCTCTTCACTCTTCCCGACGCCCT
CTTTCCTTCCCTCCCTCTTCTCTACTCTCGCCTTTTCTTCTCTTCTTCCT
TCCCGGTCTCGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_l01.b1 MSMg01no438_l01.b1 CHROMAT_FILE:
MSMg01no438_l01.b1 PHD_FILE: MSMg01no438_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:34 2005
         (407 letters)



>mm_chr6_117599564_117600370
          Length = 807

 Score =  739 bits (382), Expect = 0.0
 Identities = 400/406 (98%), Gaps = 3/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcactatgtatatctcggccttgaacttgggagtcatcctccaagtgctggggtta 62
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcactatgtatacct-ggccttgaacttgggagtcatcctccaagtgctggggtta 262

                                                                       
Query: 63  taatgtgcaccacggtgcatggaagattccacatatttaggtattgtatcttggtgtaat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatgtgcaccacggtgcatggaagattccacatatttaggtattgtatcttggtgtaat 322

                                                                       
Query: 123 ttattcagatagttagtccaccctactgccaaagatggagatgccatcattggaatttcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttattcagatagttagtccaccctactgccaaagatggagatgccatcattggaatttcc 382

                                                                       
Query: 183 cacaaaccaccaccatctgtcttccttcccctcctcctccctcctgcttcctatttcttc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacaaaccaccaccatctgtcttccttcccctcctcctccctcctgcttcctatttcttc 442

                                                                       
Query: 243 ctccttctctccttttcctttccttattttattccctcccttttgcttagaagaatgagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctccttctctccttttcctttccttattttattccctcccttttgcttagaagaatgagg 502

                                                                       
Query: 303 aaaaatcagcctcacataattagctgaaagctctcattcttaggagaacacaagaaaaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaaatcagcctcacataattagctgaaagctctcattcttaggagaacacaagaaaaaa 562

                                                         
Query: 363 atatgaccagtggccctcgg-ctatctgcaacaatctgatgacacg 407
           |||||||||||||  || || |||||||||||||||||||||||||
Sbjct: 563 atatgaccagtgggtct-ggtctatctgcaacaatctgatgacacg 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)