BAC Information

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BAC

Clone NameMSMg01-438N04
Chromosome6 (Build37)
Map Location 114,371,429 - 114,371,916
singlet/doubletsinglet
Overlap geneHrh1
Upstream geneCidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1
Downstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438N04.T7 (MSMg01no438_n04.b1)MSMg01-438N04.TJ (MSMg01no438_n04.g1)
ACCAG529325AG529326
length785750
length of high quality
(start - end)
429 (38 - 466)489 (72 - 560)
definitionCHROMAT_FILE: MSMg01no438_n04.b1 PHD_FILE: MSMg01no438_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:44 2005CHROMAT_FILE: MSMg01no438_n04.g1 PHD_FILE: MSMg01no438_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTC
CTACTCTCTGCTACCACAGCTCCTTTATGTCCAAGAAATATATATGTGAC
CCTGGGTATATAGGAATACAAAATAGATATACAGGATCTAGGGAGATTGC
CCAGTGGGTAAGAGTACTGGCTGCTCTTGCAGAGGACCTGGGTTTGATTT
CCAGGACCCACAGGGCAGCTCACAGCCATCCGTAGCTTCAGTGTCATGTG
ATCCAGTGCCGCCTTCTGGTCTTCACAGATATTTTACACATGTGGTGCAC
AGACATAAATGCAGGCAAAATACTCATGCACATAAAAAATAATAATAAGA
GTACAAACCAAATACTTACTGATGATAAATTATAAAGAAATTTCTTTGAA
AACAGTTCTTTGGTACACATAGAATTTTGTCATTTGTTAAAACAAAGCAA
AATTGTATCCTAATGAGGTGGCTGCGCTTACATAAACAAGCAGATTTTAG
CTGACTGTGTGATACTGCGGTAGGCAGAGTCGCTTTTATTGGTTTTCTGA
GATGACCAATATTTTGGCGTCATCGATACTGATCCAATCTGCATAAACAG
ATACTTTCACAACTTGATCGGTTATGTTCCGGGTCACTTTTCTAAAATTG
TATTTTTTATCCCAGGTCCTCAGGATAAACATATTGGAAAAAATTTTTTA
TTCATCCTCTTTTACTCAGGTTCTATATAAATAATTGTTTTCGTTATCTT
CCTCTCTATCCCCCTCTGCGTGTCTATTTTTTCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAGCCCTGAGCACAGGAAGAGGGGCAG
AGTACCTAGGAAGCCCTGTGAGTCAGACGAGGGAGGATCATGCATACACG
CGCATACACAAACAAATGTGCCTCTGGGTTGGTCCAGCCTAAGTTTCTCT
CCATGTGTGTCTGGAACTCTGGGTACAGGTAAGTCTAGACCCCAGGCAGA
GCTGAAAGCTCAAAAGTCCTCAGCCTGAGTGCACCTTCCCTGCAACCTGG
GGCAGCTCCCACTTCAGACACTACCCAGTATCCTGCTTCTGCCTGAAGGT
CACTTTGGAATCATGCCAGGCCTCCCCAGTCCATCATGAGAGTGCAGACA
TGCCGATCTCCATAACTTCTGCTACAGACCCAACAGACCCTCAGACCCAG
GGCTCTGCTCACTCAACCTCCCTGCCTCGTCACTTTGCAAAAGTGGGCTG
GGCTGGACATGATGGCACCAGAGCTTTCTGATGAATGGAAACAGTGTCTC
AGGATGGGACCATCAGGGATGCAGGAGTGGGATGGGCCTTCCATCTTCCT
CAGGTTCCTCCACAGTTTCCAGAAATTCCATCCCAGAGCAGTGAGGAGCA
TTGAAGGTAAAAAGAGGGAACAATCCTTGGTGGTATTCCCCAAATTGGGT
GTGGCCTGTCATACTCTTCTTGGATCTTATATTTCCAACCTCTTTTTTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_n04.g1 MSMg01no438_n04.g1 CHROMAT_FILE:
MSMg01no438_n04.g1 PHD_FILE: MSMg01no438_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:44 2005
         (489 letters)



>mm_chr6_114371229_114372117
          Length = 889

 Score =  890 bits (460), Expect = 0.0
 Identities = 481/488 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagccctgagcacaggaagaggggcagagtacctaggaagccctgtgagtcagacgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 688 tttagccctgagcacaggaagaggggcagagtacctaggaagccctgtgagtcagatgag 629

                                                                       
Query: 61  ggaggatcatgcatacacgcgcatacacaaacaaatgtgcctctgggttggtccagccta 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaggatcatgcattcacgcgcatacacaaacaaatgtgcctctgggttggtccagccta 569

                                                                       
Query: 121 agtttctctccatgtgtgtctggaactctgggtacaggtaagtctagaccccaggcagag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agtttctctccatctgtgtctggaactctgggtacaggtaagtctagaccccaggcagag 509

                                                                       
Query: 181 ctgaaagctcaaaagtcctcagcctgagtgcaccttccctgcaacctggggcagctccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctgaaagctcaaaagtcctcagcctgagtgcaccttccctgcaacctggggcagctccca 449

                                                                       
Query: 241 cttcagacactacccagtatcctgcttctgcctgaaggtcactttggaatcatgccaggc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 448 cttcagacactacccagtatcctgcttctgcctgaaggtcactttggaatcatgccagcc 389

                                                                       
Query: 301 ctccccagtccatcatgagagtgcagacatgccgatctccataacttctgctacagaccc 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctccccagtccatcatgggagtgcagacatgccgatctccataacttctgctacagaccc 329

                                                                       
Query: 361 aacagaccctcagacccagggctctgctcactcaacctccctgcctcgtcactttgcaaa 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 328 aacagaccctcagacccagggctctgctcactcagcctccctgcctcgtcactttgcaaa 269

                                                                       
Query: 421 agtgggctgggctggacatgatggcaccagagctttctgatgaatggaaacagtgtctca 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggtgggctgggctggacatgatggcaccagagctttctgatgaatggaaacagtgtctca 209

                   
Query: 481 ggatggga 488
           ||||||||
Sbjct: 208 ggatggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)