BAC Information

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BAC

Clone NameMSMg01-439L14
Chromosome6 (Build37)
Map Location 9,859,418 - 9,859,685
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040238, Nxph1
Downstream geneLOC330264, LOC100040285, LOC667650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439L14.T7 (MSMg01no439_l14.b1)MSMg01-439L14.TJ (MSMg01no439_l14.g1)
ACCAG530010AG530011
length759764
length of high quality
(start - end)
271 (43 - 313)342 (70 - 411)
definitionCHROMAT_FILE: MSMg01no439_l14.b1 PHD_FILE: MSMg01no439_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:56 2005CHROMAT_FILE: MSMg01no439_l14.g1 PHD_FILE: MSMg01no439_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGATTTCCCTTCTACTTGCACATGGTCAATCTCAACAAATGTCCATA
TGAGTAACTAGTATGTTTTTATGTGTTTTGTGTATAACACAGTTACATAC
AGAGGGAGAAGTCATACATTCAAGAAATGATGGAAATTGGAGAGGAGAAG
GTAATGTGTAATGAAGTACTCACTCATGAAACTTTCAAAAGAAAATATTA
TTTACAAGGGCATTTATGAAGAAGAAACTGAGAATGCAGAATAACATTTG
AAATGTCAATAAATTTTATCACCAACAGAAAAAAGAAAAAAAGTAAAAAA
AAAAATAAAAAATAAAAGGTAGTCAATGTGCTGACCTGAAAAGAAAGTTG
AAAACAATCATTTCAGGAATACAAATGATCATTCATGATTAATATTTTAA
AGGAGAAAATATCTAAGAATTACTCATTAATTTCACAACCTAAAATCAAC
TATTAACTTTGGTATATTTCTATTTTAAGTTCTGTGTAAAAGGACCATTC
AGTGAGATTATACCTTGTTCCCCCTGAGATAAAGACCATGACATTGTAAC
CATGCTTTGAAACCTAATGCCTTCCCTGGAAAAATCGTCCTTCTATTCCA
CCCCTCTCACCCCCTTGCCCAGATAAACTTTTTTTTATTCTCACCCGCCC
CTTCTTTTTTTTCTCTACCCCCTTTTTTTTTTTTTGTCCACTCTTCCCCC
CTCTTATTC
ACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCGTTTAGTTCTATACCCCATTTTTTGATT
GGGTTGTTTGGTTTTATGATGGTTCACTTCTTGAGTTCTTTATATATTTT
GGACATTAGCCCTCTATAAGGTGTGGGATTAATGAAGATTATTTTTCCCA
ATCTGTAGGTTGCCAATTAGTCTTATTGGCTATGTCTTTTGCCTTACAGA
AGCGTTTTAGATTAATGAGATCCCATTTTTCAATTCTTGATCTTAGAGCA
TGTGCCATTCTATTTCTGTTTAGAAGATTTCCCCCTGTGCCAATGAGTTC
AAAGCTCTTTCCCACTTTCTTTTCAGTTGGAATCAGTGTATCTGGTTTTA
GGTTGAAGTCCTTGATCCACTTGCACTTGAGTTTTGTGCAACGTGACAAG
GGTCTATTTTCATTTTTCTACCCACCGACAGCCATTTACTCTATCACATT
TGTTGAAGATGCTTGCTTTTTTCCATTGTATATTTGGCCTCCCTTGTCTT
ATATCCTTTTGTCCCTTACTTTGCGCTTCTTTTTCTGTTTTTCCCCCTCC
CTTTTCTTCCTACTTCACTTTTCCTTTTCTGCCTTCTCTCTTTAATCTTT
TTTGTTTTTCCTTCTACACCCCACTCGCCTTTATTATCTTTTTTTTTTTT
TCCACCTCCCCTCCGCCTGTTATCTCCCTCTTTCTTCTTTTTTTTCTTCC
CGCTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_l14.b1 MSMg01no439_l14.b1 CHROMAT_FILE:
MSMg01no439_l14.b1 PHD_FILE: MSMg01no439_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:56 2005
         (271 letters)



>mm_chr6_9859215_9859885
          Length = 671

 Score =  464 bits (240), Expect = e-135
 Identities = 261/272 (95%), Gaps = 8/272 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctctga----tttcccttctacttgcacatggtcaatctcaacaaatgtccatat 59
           |||||||||||    ||    ||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 gaattctctgacaggtt----ttctacttgcaaatggtcaatctcaacaaatgtccatat 259

                                                                       
Query: 60  gagtaactagtatgtttttatgtgttttgtgtataacacagttacatacagagggagaag 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 260 gagtaactagtatgtttttatgtgttttgtgtataatacagttacatacagagggagaag 319

                                                                       
Query: 120 tcatacattcaagaaatgatggaaattggagaggagaaggtaatgtgtaatgaagtactc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcatacattcaagaaatgatggaaattggagaggagaaggtaatgtgtaatgaagtactc 379

                                                                       
Query: 180 actcatgaaactttcaaaagaaaatattatttacaagggcatttatgaagaagaaactga 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 actcatgaaactttcaaaagaaaatataatttacaagggcatttatgaagaagaaactga 439

                                           
Query: 240 gaatgcagaataacatttgaaatgtcaataaa 271
           ||||||||||||||||||||||||||||||||
Sbjct: 440 gaatgcagaataacatttgaaatgtcaataaa 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)