Query= MSMg01no440_k22.b1 MSMg01no440_k22.b1 CHROMAT_FILE:
MSMg01no440_k22.b1 PHD_FILE: MSMg01no440_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:13 2005
(495 letters)
>mm_chr6_101543376_101544270
Length = 895
Score = 928 bits (480), Expect = 0.0
Identities = 489/492 (99%)
Strand = Plus / Plus
Query: 4 ggaattcactgttcgattaccattacttcacttgtatgtgaacaccatcgcttttttctt 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgttcgaagaccattacttcacttgtatgtgaacaccatcgcttttttctt 263
Query: 64 cttccatttgccttccaagtaagaacaaactcatgccttgtgtaatttattaattgatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttccatttgccttccaagtaagaacaaactcatgccttgtgtaatttattaattgatgt 323
Query: 124 ttttactgaattttgtcttgtgtggatatctttatatctgtaaaatgtttgttcttcaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttactgaattttgtcttgtgtggatatctttatatctgtaaaatgtttgttcttcaca 383
Query: 184 tatatcatccaaagaaattgaataaaatggcattttaaaatcttgagacgttggatagtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatatcatccaaagaaattgaataaaatggcattttaaaatcttgagacgttggatagtt 443
Query: 244 ttaaaacttcaactgatctgttaagccaatttagttgagtcaggctgggtgagccccagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaaaacttcaactgatctgttaagccaatttagttgagtcaggctgggtgagccccagg 503
Query: 304 aaagttataaaatctaaattaaatggaacatagaatgtaatcttccagcagtgaatctaa 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 aaagttataaaatctaaattaaatggaacacagaatgtaatcttccagcagtgaatctaa 563
Query: 364 ctcagcacttgcctcctccagcgagccctgttctgctttggccccttgccaacatgaatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcagcacttgcctcctccagcgagccctgttctgctttggccccttgccaacatgaatt 623
Query: 424 ccttgtgataatctttgggattgcacaattccttttaggatggtaatgaaaggaataaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccttgtgataatctttgggattgcacaattccttttaggatggtaatgaaaggaataaag 683
Query: 484 aacatttgctct 495
||||||||||||
Sbjct: 684 aacatttgctct 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_k22.g1 MSMg01no440_k22.g1 CHROMAT_FILE:
MSMg01no440_k22.g1 PHD_FILE: MSMg01no440_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:13 2005
(481 letters)
>mm_chr6_101722315_101723194
Length = 880
Score = 833 bits (431), Expect = 0.0
Identities = 476/509 (93%), Gaps = 29/509 (5%)
Strand = Plus / Minus
Query: 1 accagcacagagacaggtggcacacgcctttaatcccagcacttgggaggcagaggcaga 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 866 accagcacagagacagatggcacacgcctttaatcccagcacttgggaggcagaggcata 807
Query: 61 ggcaggcagatttctgaattcaaggacagtctggtctacagagtgagttccaggacaacg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggcaggcagatttctgaattcaaggacagtctggtctacagagtgagttccaggacaacc 747
Query: 121 agggctatacagagaaaccctgtctcaaaaacaaaaca---------------------- 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agggctatacagagaaaccctgtctcaaaaacaaaacaaaacaaacaaacaaacaaaaac 687
Query: 159 ------aaacaaacaaacaaaaaagaatcacttaaccatcttcagtgtagaaactatcag 212
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 686 ccaaacaaacaaacaaacaaaaaagaatcacttaa-catcttcagtgtagaaactatcag 628
Query: 213 cagtatttaggagaaattggtgtgtccacaatgaagcctagtgagcaaaaaccaacagta 272
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 627 cagtatttaggagaaattggtgtgtccacaatgaagcccagtgagcaaaaaccaacagta 568
Query: 273 aagtcacactccccaagttattgagataataattcataagagtcctattgtctttaggca 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagtcacactccccaagttattgagataataattcataagagtcctattgtctttaggca 508
Query: 333 gatccttagatggacaaggttatggaaaggcaaagctattcaacatgaaaatggtcataa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gatccttagatggacaaggttatggaaaggcaaagctattcaacatgaaaatggtcataa 448
Query: 393 acacatacaactggcttgattccagtggcaacaggagtgttttacaaaagatgccctaaa 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acacatacaactggcttgattccagtggcaacaggagtgttttacaaaagatgccctaaa 388
Query: 453 aagcaataagtataccaaagattacttag 481
|||||||||||||||||||||||||||||
Sbjct: 387 aagcaataagtataccaaagattacttag 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space: 409770
Effective search space used: 409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
