BAC Information

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BAC

Clone NameMSMg01-442A09
Chromosome6 (Build37)
Map Location 56,919,671 - 56,920,182
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21
Downstream geneV1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442A09.T7 (MSMg01no442_a09.b1)MSMg01-442A09.TJ (MSMg01no442_a09.g1)
ACCAG531768AG531769
length766768
length of high quality
(start - end)		514 (48 - 561)541 (79 - 619)
definitionCHROMAT_FILE: MSMg01no442_a09.b1 PHD_FILE: MSMg01no442_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:01 2005CHROMAT_FILE: MSMg01no442_a09.g1 PHD_FILE: MSMg01no442_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCTCTGTCTCATGTGTATATAATTTGAAGGTTTGATTTGTTT
TATGGTGTCCCACATCCACAACACTTTCTAGGCCTACACTAGGCCAACTG
AACTATATTTTACAGTCCCGCAGCCTGATTTCTTCTGAAAATAACTGTTA
TACTATCTCCTGTGTGTGTGCTCTCTATTAAACATCACTTAACCTTAGTG
TGTTTGAATGAGATGACACTTTTCTAATTTTCTCTAAAGAGCTGTTAATT
TCTAGCTGTGACACTGCAGTCATTGTTTTATACTTATAGAGGGCACCAGG
AATGCTTTGGAAGCAGGATAGATATCTTGGGGAATATAAATTGATATTCT
ACTTCTTTTAAATGGGATATTATTATTCTTACTTTTGTTTTGTTTACAAG
GTTTGGGATCAGTTAATTTACACACACAGATATGGCCAAGAGAGAAATCT
CACACATGGGAAACCCAGAGCTCAGCTGTTCCTATACTACTGTTCTCCTG
GAATTAGGGAAGCTTACTTTTCCATTTGATGTTTACAGCTTATGACTATG
TCAAGGCCAGAAGTGCCTTCTCCAGATGAAAGTGATAACTATGGGTCCTG
TAGGTAGATAATCTGTTTTATTTTCCCCCCCATATATACCTTCGGAGGGC
CAACTTCTTCTTTGTTGATCTTTTAATCCTCTATGTGTAATCCGTTTTGA
ATTCAAAATTATTTTG

GCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAATAGACTTGG
AGGAGGAAGCAGCTCATTATGAGAGAAAAGGGTACCAGCCAGATAAAATG
CTAGCTAATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCA
TGCTGCTCAGCCTCCCGGCAGTCGGCTTCAAGGTCATAGTGCGCTTCCGC
CCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGG
CAATGGACAGAGAGGCAATGCACAGACTCGTTCATTCCAAAGGAGGAACA
AAGGAAAATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGC
GTGTCCACGCTCCGGTAGAATATGTGCAGATTAAAGAGCTTGCCGAGTCG
GTCCGTAAATATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAG
GCTTGCCGGCATGGCACTAACTCCTGCCGACTGGCAAATGATTGCAAAAG
CCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCTCTATGGCAA
GAGGCTGCACAAGCGCAGGCCCGAGCAAACGCTGCTGCTTTGACTTCAGA
GCAGAGAGATTGGACTTTTGACTTGTTAACAGGTCCGGGAGCTTATACTG
CTGATCAAACAAACTACCCCTGGGGAGCTTATGCCCATAATTCCTCCACG
GCTACTACGTTCCGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_a09.b1 MSMg01no442_a09.b1 CHROMAT_FILE:
MSMg01no442_a09.b1 PHD_FILE: MSMg01no442_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:01 2005
         (514 letters)



>mm_chr6_56919468_56920382
          Length = 915

 Score =  944 bits (488), Expect = 0.0
 Identities = 506/512 (98%), Gaps = 1/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctctgtctcatgtgtatataatttgaaggtttgatttgttttatggtgtcc 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctctgtctcctgtgtatataatttgaaggtttgatttgttttatggtgtcc 263

                                                                       
Query: 64  cacatccacaacactttctaggcctacactaggccaactgaactatattttacagtcccg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacatccacaacactttctaggcctacactaggccaactgaactatattttacagtcccg 323

                                                                       
Query: 124 cagcctgatttcttctgaaaataactgttatactatctcctgtgtgtgtgctctctatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagcctgatttcttctgaaaataactgttatactatctcctgtgtgtgtgctctctatta 383

                                                                       
Query: 184 aacatcacttaaccttagtgtgtttgaatgagatgacacttttctaattttctctaaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacatcacttaaccttagtgtgtttgaatgagatgacacttttctaattttctctaaaga 443

                                                                       
Query: 244 gctgttaatttctagctgtgacactgcagtcattgttttatacttatagagggcaccagg 303
           |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||
Sbjct: 444 gctgttaatttctagctgtgacactgcagtcactgtcatatacttatagagggcaccagg 503

                                                                       
Query: 304 aatgctttggaagcaggatagatatcttgggg-aatataaattgatattctacttctttt 362
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 aatgctttggaagcaggatagatatcttgggggaatataaattgatattctacttctttt 563

                                                                       
Query: 363 aaatgggatattattattcttacttttgttttgtttacaaggtttgggatcagttaattt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaatgggatattattattcttacttttgttttgtttacaaggtttgggatcagttaattt 623

                                                                       
Query: 423 acacacacagatatggccaagagagaaatctcacacatgggaaacccagagctcagctgt 482
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acatacacagatatggccaagagagaaatctcacacatgggaaacccagagctcagctgt 683

                                           
Query: 483 tcctatactactgttctcctggaattagggaa 514
           ||||||||||||||||||||||||||||||||
Sbjct: 684 tcctatactactgttctcctggaattagggaa 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space:   456120
Effective search space used:   456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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