BAC Information

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BAC

Clone NameMSMg01-442D21
Chromosome6 (Build37)
Map Location 149,265,203 - 149,403,943
singlet/doubletdoublet
Overlap gene2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182
Upstream geneTmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik
Downstream geneLOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442D21.T7 (MSMg01no442_d21.b1)MSMg01-442D21.TJ (MSMg01no442_d21.g1)
ACCAG531934AG531935
length798776
length of high quality
(start - end)		421 (49 - 469)424 (78 - 501)
definitionCHROMAT_FILE: MSMg01no442_d21.b1 PHD_FILE: MSMg01no442_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:19 2005CHROMAT_FILE: MSMg01no442_d21.g1 PHD_FILE: MSMg01no442_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,403,527 - 149,403,943)(149,265,203 - 149,265,624)
sequence
TTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTGGGTTCTGAAGGGACTACTATCCTCAACTATCCTCCCAT
CTAATTAAAGCAATGATCAAAGTTCGTAAAATTACAGCTACCCCAAGAAA
AGTACAGTTTATTTGAAGAGATGTAACTGTGCTTTTTTTTACTGGTAGAA
ATAACTTCTCATTTCTCCTTTATGGTTATAAAACAAAACAGTCTATAATC
ACAAAATCATATGAATATAAAATAATCCAGCTTGAGATAAAAAGACTTGC
TAGCTAATTTTCAGTTAAAACACATTCTAAACATGTATATAGTGTTATCT
TTAACAACTTCAAATACTTTCATTTGATTTGTTTTTATGCTGTTTCCAAA
TATTTCATCATTATAAATCTTTTCTTTTTTTAAAGATTTATTTACTTATT
ATATATAAGTACACTGTAGCTGTCCTCAGACACACCCGAAGAGGGCATCA
GATCCCATTACAGAAGGTTGTGAGCCACCATGTGGGTGCTGGGAATTGAA
TCCAGAGTTCTCGAAAAAACAACGTGGTCTTTACCGTTGAACCATTCTTC
CGCCCCAAAAATCTTTTCTCTAACAATTGTTTTTGTCCAACTATCATTAA
CCCTTCATGGTTTGGCTCCCTTCTACAAAAATTCCCTCCCTCCCTGCTTC
CCTTTTCCCTTTTTTTTCCCCCCTTAATATCCCCGTTTTCTCCTCTCTTT
TTTTATTCCCCCCCTATATTTTTTTTTTTCTCTATCTTCCCCCACCTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAAAAAAAAAATAACAATTG
CCACAATGATTTACTCTTATTAATGATCAACCCAGCTTAGGTCACTTCTT
GCATACCTTTTGGGAACTCACTTAGAACCACAAGAATCAGACTTACACAG
CCACAGATTGTTCTTCTGCATCCTAGTTCCCATCAACAGGACCTGTACAG
CCTTCCCCTTCATTCAGGTGTTAGAATGACCCACTTCCAAGCTGGCTTTT
CAGTAGCCCATGTTTTGACTGATTAATATAATCCTTTCCTCCTTTTCTGG
ACTATTGTGGAACTATGCCTTCTGTGTTCTACCATTGAGCCCCATTCTCA
GTTCTGTGTCTAAAAAACTCCTTGAGGTACCAAAACCAGAGGATGCTTAC
ATTTGTAAGTTCTGCTTATTCTCCTGTGTACTTCACATCATTTCTAGGTT
ATTTAAAATGCTTAATACAAAGTAAGTGCTATGTAAACCATTGTTATGCA
GGAGCCTTTTAGAGAATAGAAACACGACAGAATCGGACCAACCCAATTTC
TCCTGGTTTTTGGTTGGGGGTTTCCAAAAAGGGTTCTCTGTATACCCCGG
CTGGCTTGGAGTCCCTTTGTTTAACACTTTGTCCTGTAATCAAAAAACAA
CATAGCTCGGCCCCGCCTCCCCATATGGGAAAAAAGCGTCCGCACCCCCC
CGCTCTTTTCTCTCCTTCTACCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_d21.b1 MSMg01no442_d21.b1 CHROMAT_FILE:
MSMg01no442_d21.b1 PHD_FILE: MSMg01no442_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:19 2005
         (421 letters)



>mm_chr6_149403375_149404195
          Length = 821

 Score =  799 bits (413), Expect = 0.0
 Identities = 416/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgggttctgaagggactactatcctcaactatcctcccatctaattaaagca 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 569 gaattcagtgggttctgaagggactactatcctcaactatccttccatctaattaaagca 510

                                                                       
Query: 65  atgatcaaagttcgtaaaattacagctaccccaagaaaagtacagtttatttgaagagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgatcaaagttcgtaaaattacagctaccccaagaaaagtacagtttatttgaagagat 450

                                                                       
Query: 125 gtaactgtgcttttttttactggtagaaataacttctcatttctcctttatggttataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtaactgtgcttttttttactggtagaaataacttctcatttctcctttatggttataaa 390

                                                                       
Query: 185 acaaaacagtctataatcacaaaatcatatgaatataaaataatccagcttgagataaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acaaaacagtctataatcacaaaatcatatgaatataaaataatccagcttgagataaaa 330

                                                                       
Query: 245 agacttgctagctaattttcagttaaaacacattctaaacatgtatatagtgttatcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agacttgctagctaattttcagttaaaacacattctaaacatgtatatagtgttatcttt 270

                                                                       
Query: 305 aacaacttcaaatactttcatttgatttgtttttatgctgtttccaaatatttcatcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacaacttcaaatactttcatttgatttgtttttatgctgtttccaaatatttcatcatt 210

                                                                    
Query: 365 ataaatcttttctttttttaaagatttatttacttattatatataagtacactgtag 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ataaatcttttctttttttaaagatttatttacttattatatataagtacactgtag 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no442_d21.g1 MSMg01no442_d21.g1 CHROMAT_FILE:
MSMg01no442_d21.g1 PHD_FILE: MSMg01no442_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:19 2005
         (424 letters)



>mm_chr6_149265001_149265824
          Length = 824

 Score =  808 bits (418), Expect = 0.0
 Identities = 421/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaaaaaaaaaaataacaattgccacaatgatttactcttattaatgatcaacccagctta 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaaaaaaaaaataacaattgccacaatgatttactcttattaatgatcaacccagctta 262

                                                                       
Query: 63  ggtcacttcttgcataccttttgggaactcacttagaaccacaagaatcagacttacaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggtcacttcttgcataccttttgggaactcacttagaaccacaagaatcagacttacaca 322

                                                                       
Query: 123 gccacagattgttcttctgcatcctagttcccatcaacaggacctgtacagccttcccct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccacagattgttcttctgcatcctagttcccatcaacaggacctgtacagccttcccct 382

                                                                       
Query: 183 tcattcaggtgttagaatgacccacttccaagctggcttttcagtagcccatgttttgac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcattcaggtgttagaatgacccacttccaagctggcttttcagtagcccatgttttgac 442

                                                                       
Query: 243 tgattaatataatcctttcctccttttctggactattgtggaactatgccttctgtgttc 302
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgattaatataattctttcctccttttctggactattgtggaactatgccttctgtgttc 502

                                                                       
Query: 303 taccattgagccccattctcagttctgtgtctaaaaaactccttgaggtaccaaaaccag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taccattgagccccattctcagttctgtgtctaaaaaactccttgaggtaccaaaaccag 562

                                                                       
Query: 363 aggatgcttacatttgtaagttctgcttattctcctgtgtacttcacatcatttctaggt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggatgcttacatttgtaagttctgcttattctcctgtgtacttcacatcatttctaggt 622

             
Query: 423 ta 424
           ||
Sbjct: 623 ta 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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