BAC Information

Click to search

BAC

Clone NameMSMg01-443B05
Chromosome6 (Build37)
Map Location 21,811,190 - 21,811,434
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
Downstream geneIng3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443B05.T7 (MSMg01no443_b05.b1)MSMg01-443B05.TJ (MSMg01no443_b05.g1)
ACCAG532569AG532570
length748767
length of high quality
(start - end)
245 (80 - 324)197 (82 - 278)
definitionCHROMAT_FILE: MSMg01no443_b05.b1 PHD_FILE: MSMg01no443_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:33 2005CHROMAT_FILE: MSMg01no443_b05.g1 PHD_FILE: MSMg01no443_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATCC
GCGGAATTCATCAGGAGTTTCAAAAACATTTATGAATCTGTGTCCACCGA
TAGCTACTCATTTGTCCTTCTAATCCACAGTCAAGCCTGTAAATCATGAT
TTCTCTAACTTATCTTCATTTATTTACAGTGTAAAATGACAGTATTATTG
GATTCTTTAAACTTGAAAAATCATCACAAAATAACTAGTGAATAAGTGAC
TTGCAGTATCTTGGCCAAAGTGCTCCTGTGGTTTTTCAATTCAGTAAAAT
GAACCCATTTCAAATCTCTGGCTCTTTTTTCTTTGTCATATCCCCCACTT
GGCACCCTGGATTCCCTACATGATTATTGCAAAGGCAACACTTACCATGC
CCTGATGAATGCAACCATTATAACACAAAGGAAGTCATTAATGCATCTTA
ACAGAAAGACTATGGTCTGCGAGCTTCTAATTATGCTCCTGCTGCAATTA
TCCTCCATCTCACGAATTTTCTTAATGGACAAATGTATTTTTCCCATCCT
ATGCATTTCCCCTAGATTAATTTATGTTGTACCCCCTAAGCCCCATTTTA
TTTTGAACCCCGCACCCTTTTTATGAGGGTTTTTTCATCATATTTTCAAC
TGTCACTAAAAACCTTGAATATTTTTTTATATATTTTAACATGGCGCTTA
TTAAATTCTTCGGTANCCCCTAACATCTTTTCCCCCATTTCTACCCCC
TCTCCTCCGAAGAAGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTAAGTCAGACAGCTA
TCTCCACATTCTCAAAGAAGCAGAGCATCACTGCATTATTTGTCTTAGTT
ACTTTTTCATTGCTATGATAAAAACACCAAGCCCAGAGTAACTCATAGAA
GGAAGGGTTTATTTGGCGCTTCCGGTCCCGAAGGGAAAGGAGCCTGTCAC
CCTAACATCAAGGCAGCATCTCAACAGGCAGAACACGGCAGCTGATGTAT
CAGCTGACACCTCACATCTTTATTATTATTATTATTATTATTATTATCAC
CACTATTATCTATTACTATCACCCCCCTTCCCTCTTTCCTTCTCTCCCCC
CCCCTTTCCTTTTTCCCCTTCCCTCTCCCCCCCCCTCCCCCTTTTTCCTT
TTATTCTTCCCCCTTCCTTCCTTTTCCTTCCCCCCTTTTTTTCCCCCCCC
CCTTCTTTTTCCTTCTCCTTTTCTTTTCTTTTTCCCTTCTTTTCTCCTTT
CTCTTTTTCTCCCTCTTCCCCTTTTTTTTTTTCCTTCCCCCTATCCCCTT
TTACATTTCTTTCCCCTCCCCCCTTATTTTTTATCATTCCTCCCCCTTTT
CCCCCTTTTACATTCCCCCTTCCCCTTATACCTCTCTTTCCCTCCTCCCC
CCCCTTACCCCCCTCTTTTTCCATTCCCTTTTTTTTCTTCCCTTAACCTC
CATCCTTTCCTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_b05.b1 MSMg01no443_b05.b1 CHROMAT_FILE:
MSMg01no443_b05.b1 PHD_FILE: MSMg01no443_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:33 2005
         (245 letters)



>mm_chr6_21810990_21811634
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgaatctgtgtccaccgatagctactcatttgtccttctaatccacagtcaagcctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 201 ttatgaatctgtgtccaccgatagctactcatttgtccttctaatccagagtcaaacctg 260

                                                                       
Query: 61  taaatcatgatttctctaacttatcttcatttatttacagtgtaaaatgacagtattatt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 taaatcatgatttctctaacttatcttcatttatttacagtgcaaaatgacagtattatt 320

                                                                       
Query: 121 ggattctttaaacttgaaaaatcatcacaaaataactagtgaataagtgacttgcagtat 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ggattctttaaacttgaaaaatcatcacaaaataattagtgaataagtgacttgcagtat 380

                                                                       
Query: 181 cttggccaaagtgctcctgtggtttttcaattcagtaaaatgaacccatttcaaatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggccaaagtgctcctgtggtttttcaattcagtaaaatgaacccatttcaaatctct 440

                
Query: 241 ggctc 245
           |||||
Sbjct: 441 ggctc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)