BAC Information

Click to search

BAC

Clone NameMSMg01-443M09
Chromosome6 (Build37)
Map Location 11,530,711 - 11,530,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443M09.T7 (MSMg01no443_m09.b1)MSMg01-443M09.TJ (MSMg01no443_m09.g1)
ACCAG533099AG533100
length726742
length of high quality
(start - end)
192 (133 - 324)204 (334 - 537)
definitionCHROMAT_FILE: MSMg01no443_m09.b1 PHD_FILE: MSMg01no443_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:28 2005CHROMAT_FILE: MSMg01no443_m09.g1 PHD_FILE: MSMg01no443_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCATAACA
CCGCGGAATTCCAGGATATCCCGGAATATACAGAGAAACCCTGTCTCAAA
AAACCAAAATAAATAAATAAATAATATAACCAAATAAATAAAATAAAAAA
ACAGGCATGAAAAAGCATTTATGGGATCATCTCACCCAATGTAAAATCTA
AAAGCGTTGATGTCACAGAGGTTGAAAGTAGGATGGTGGTTTCCAGGGAT
TGAGGATTATATGGAAAGAGAAGGCTGATGAATGGTAAATAGAGTTTTAA
TTGATGGAAGAAATCAGTTCTTGTGTACTGNTTTTGAGCAGCATTAGGAT
TTTAGATGCTAACCTTTGTACTGTTCATTTTACAAAATACATAGAAAGAA
GTTTGAATATGTTCACCATAAGTATACGATTATTGTTTGTTGGTAGGCAT
GTTCACCTTGACTCACACAATACAATGAGTCCATCCATGACGGCAACACA
GGGCATCCCTAAAGTATGGATTACTTTAATGTACCAATTCACAAATATCA
GCCTATGTTCTTGCTTCAGCAGTAAATACCCTATCAGTTTGAACGACACG
GTTATCACAACTCCCGAACTACGCAACCCGTTTATTTTTGAATTTGTCCC
CACCCTGTTATTTATTGTCTGTCCCCCCAGCCACCCTTTATTCCGACTTT
GATGCCATAATTTCTTATTGATTCAA
TTTTTTCGAAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGAATTGCCCTCATATA
TTTTAGAGTTTCTACTGCACTGGGTTTTTTTTTAATATTTACTTAATAAT
GTTTCCTTTGAAAGTATAGAGTTAGATTAAAGATATTCTAATGATAAAGA
CTATGATTGTTTTCTAGAACTATTATCTTTGGTGCATAGGACATAGAAAA
GGAATATCTCTTCCAAAATTGTCAACCATGTAAGTCTTCTCAGAAACGGA
GAGAAAAATATAAAAATACCCTTCCTTATGTTTAGGCAGAACTTCTCTTT
AACTAGCCTTCAAAATCTCATACATCTTTCTGATTTTTCTTATTCATAAA
TACGAGCGCATATTCTACCATCATCTATCTACCTACCTACCTACCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTACCTCTCTCTGTCTATTTAAATATAGCTATCACAAAGACACAGA
CTCACTTATAGACACCTAGATACCCTCTCCTACTCTCACCCCCTCCCCGA
TAGGCTTTTCAGATTAATCCCCCCCAAAAAAAAATGATTTAAATTTCACA
ACTTTTCTGATTGCCGAAGCCCATTTTTAACCTGAAGGAACGGGGGCCCC
CTTTAACCTCTCTCTTAGACCGGAAAAAAAACATCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_m09.b1 MSMg01no443_m09.b1 CHROMAT_FILE:
MSMg01no443_m09.b1 PHD_FILE: MSMg01no443_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:28 2005
         (192 letters)



>mm_chr6_11530508_11531100
          Length = 593

 Score =  313 bits (162), Expect = 3e-90
 Identities = 183/190 (96%), Gaps = 1/190 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   aaataaaataaaaaaacaggcatgaaaaagcatttatgggatcatctcacccaatgtaaa 63
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 393 aaataaaaaaaaaaaacaggcatgaaaaggcatttatgggatcatctcacccaatgtaaa 334

                                                                       
Query: 64  atctaaaagcgttgatgtcacagaggttgaaagtaggatggtggtttccagggattgagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atctaaaagcgttgatgtcacagaggttgaaagtaggatggtggtttccagggattgagg 274

                                                                       
Query: 124 attatatggaaagagaaggctgatgaatggtaaatagagttttaattga-tggaagaaat 182
           |  | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 273 aggagatggaaagaaaaggctgatgaatggtaaatagagttttaattgattggaagaaat 214

                     
Query: 183 cagttcttgt 192
           ||||||||||
Sbjct: 213 cagttcttgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 593
Length adjustment: 8
Effective length of query: 184
Effective length of database: 585
Effective search space:   107640
Effective search space used:   107640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)