TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATTTCACTTTATGTCTCAACTTGAAAAATCCATTGTTTTCCTGTTGA
TGAACATGTGTGCTGGTCTCAAGTGGAGGGATAGTATAAATAATGCTCCA
ATAAATATCCTAGGGTGTGTGTTTGGTGTACAGATGCACAGTTTGCAGTC
AGTGTGCACTTAGGAGTAGAAAATGCTGGGCAAAGGTACTGTACATCATT
CAGCTCTTAGTAAAGCTGCTCTTCTAGTTTTCCAGAGTGATTCAATTCAA
CTTGCACCCACCGAAAACACATCAGCACATTAACATGGACATTTAAGATA
TAGTTAGTGGTCGTTTAAGCTGCCTATTTTGGTTTTATAAGCCATTCTGT
TGCTTTTATCCTGACAAGCCATTTGTGGCCTTATTTACATCTCTCAATGA
ATAATGAAATTAAACACTCTCTAACATGCCTTGGGCTATTTGAATTTATT
TCTCTGTGAAACAAATTTCCTTATACTGTGTGTTTGAAAATGAGATTATC
TAAAGGCTGGGGATGTGTCTCAGCTGTAGAGAGCTTGCTTATCCTGCTGC
ATTGCCTGTGTTCAGTCTCTAACACAGAGAATAAAATTTGTATCATCTGG
AATTTACACATATTTGCTAAAATCTTTTATATTTTTATTGGATATAAATC
CTTTATTTGGTCATTTTTTCCTTCCACTTACCGTTTTTACGCTTTCCTGG
CCCCACA

NAACCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGGACTACA
CAGCGAAATCCTGTCTTCAAAAACAAAAACAAAAACAAAAACAAAAAACA
AACAAAACAAAGCAAAATAAAACAAAACAACAACAATAACAGCAAAAACA
CTTATGGAGTTCTTATAAACATAGTTCATAGATCCCCAAAGACGGTAGAC
CTTAATCATTGGAATGAAATAAGAAGTAATTAATTTTGTTTGTCTAAGTT
TTTTCTATATTAATGATGGGTAAATGCTATCTCCTAAGAAAATTAATTAT
ATGTCACAGATGATATCTCAAAATTCTGTCTCAAAGAGTAAAAGCATATT
TATTTGCTTGCATAACAAGTCATGGGGAGGCAGACAAAGCTGGCTTCGGA
ACTCCCAGCACTAATGCTGTAAACACTGCCAAGACTGCTTCCCTGCAGGT
TGACTTCTTCCTGTCTTGGTGGCAATGTTTACTCGTGACAGCCACCCATC
TGTTTCTGGCTGTGGCTGTAGGCAGCTCTGGACTCCAATCTTAACAGATC
TGTCACTACAGAAGACACTTACAAAAGACAGATCTGCAACTGTCTTGATC
ATTTGCTTTATTTTACATGCGTACAGCCTAGACTAATCACTATTGCGGGG
ATCCGAATGGGCAACTATGACTGACTGAAT

Query= MSMg01no444_c02.g1 MSMg01no444_c02.g1 CHROMAT_FILE:
MSMg01no444_c02.g1 PHD_FILE: MSMg01no444_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:56 2005
         (529 letters)



>mm_chr6_106870455_106871383
          Length = 929

 Score =  957 bits (495), Expect = 0.0
 Identities = 518/529 (97%), Gaps = 6/529 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagctaggactacacagcgaaatcctgtcttcaaaaacaaaaacaaaaacaaaaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 207 caggacagctaggactacacagcgaaaccctgtcttcaaaaacaaaaacaaaaacaaaaa 266

                                                                       
Query: 61  caaaaaacaaacaaaacaaagcaaaataaaacaaaacaacaacaataacagcaaaaacac 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ------acaaacaaaacaaagcaaaataaaacaaaacaacaacaataacagcaaaaacac 320

                                                                       
Query: 121 ttatggagttcttataaacatagttcatagatccccaaagacggtagaccttaatcattg 180
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttatggggttcttataaacatagttcatagatccccaaagatggtagaccttaatcattg 380

                                                                       
Query: 181 gaatgaaataagaagtaattaattttgtttgtctaagttttttctatattaatgatgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgaaataagaagtaattaattttgtttgtctaagttttttctatattaatgatgggt 440

                                                                       
Query: 241 aaatgctatctcctaagaaaattaattatatgtcacagatgatatctcaaaattctgtct 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatgctatctcctaagaaaattaattatatgtcacagatgatatctcaaaattctgtct 500

                                                                       
Query: 301 caaagagtaaaagcatatttatttgcttgcataacaagtcatggggaggcagacaaagct 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 caaagagtaaaagcatatttatttgcttacataacaagtcatggggaggcagacaaagct 560

                                                                       
Query: 361 ggcttcggaactcccagcactaatgctgtaaacactgccaagactgcttccctgcaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcttcggaactcccagcactaatgctgtaaacactgccaagactgcttccctgcaggtt 620

                                                                       
Query: 421 gacttcttcctgtcttggtggcaatgtttactcgtgacagccacccatctgtttctggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacttcttcctgtcttggtggcaatgtttactcgtgacagccacccatctgtttctggct 680

                                                            
Query: 481 gtggctgtaggcagctctggactccaatcttaacagatctgtcactaca 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggctgtaggcagctctggactccaatcttaacagatctgtcactaca 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)