BAC Information

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BAC

Clone NameMSMg01-444C03
Chromosome6 (Build37)
Map Location 101,743,828 - 101,744,064
singlet/doubletsinglet
Overlap genenone
Upstream geneBC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444C03.T7 (MSMg01no444_c03.b1)MSMg01-444C03.TJ (MSMg01no444_c03.g1)
ACCAG533373AG533374
length747727
length of high quality
(start - end)		537 (43 - 579)237 (81 - 317)
definitionCHROMAT_FILE: MSMg01no444_c03.b1 PHD_FILE: MSMg01no444_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:56 2005CHROMAT_FILE: MSMg01no444_c03.g1 PHD_FILE: MSMg01no444_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACCAAGGTATACCAAAGGACTGAGAAACACTTGAAAATATGCTCA
ACATCCTTAAACATCAGGGAAATGCAAATCAAAACAATACTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAGTAGAT
GCTGGCGAGGTTGTGGAGAAAGAGGAACATTCCTCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAATTCCTGAGAAA
ACTGAACAAAGTACTACCAGTAGATTTCGCAATACCTCTCCTGGGCATTT
ATCCAGAAGATGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGACAGAAAATGTGGTACATTTACACAATGGAGCTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC
TGAAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACAC
AATATGTACTCACTGATAAGTGGATATTAGTCCAGAAACTTACGATACCC
TAGAATTAGACACAATTTGCTTCATGCATGTAACTCCAGAAGAACGAAGA
CCAAGTGTGGACACTTTGGCCCTTCTTAGAATTGCGAACAAAACCCC

AAAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATGCTCTTTCCCTGATG
GTGCTAGTCCCTTAAAGTTAGTATAGGAACATCAACCAGTTTGCTTAAAT
ACCCCATGTTCTAGGAAACTTCTGTCATTGCACTTTCGGTATCATGAATG
AATTATCATAGGGACCACAGTGACATGAAAAATAAAGGCATTAGGTCAAA
AAAGTCTCACAAGAATGAATTTTAACATACCAGGTGCATGCTCAACTTGT
CTGTACTTCAGTACCTCTTTTTTTCTGGTGATTTGAAATTAGGTGACATA
TGCCAAGCTGCTGCGACAGCTTGCAGATCAGTATATCTCCTGTGTCATAA
CTCAGTGCCTCATACTGAGACATGATTTGCACATTTTCCTACTGAATATT
CTATCTAGACTTCTCATAAGTCTTTTGGGACTCCCTCCAAAGCTTAGCTG
TGCGCTCATGTGACCACTTTGAATATGATCAAATACTGATTAGCTTCTTA
AGGTGTGGTTTATACAAAGATCCTTGTGTACTAATCAAAAGGCTTCAACT
GCCTGCCGCTGATGTCCCTGCATATGTTCAAATTTCCCCAAAATTTTTTT
TTTTTGTTCCTATAGTCTCGCTATTCTTCATTATTGTTTATTGGGTATTT
CCTATCAATTGTTTTTCCCTATCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_c03.g1 MSMg01no444_c03.g1 CHROMAT_FILE:
MSMg01no444_c03.g1 PHD_FILE: MSMg01no444_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:56 2005
         (237 letters)



>mm_chr6_101743628_101744264
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatgctctttccctgatggtgctagtcccttaaagttagtataggaacatcaaccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatgctctttccctgatggtgctagtcccttaaagttagtataggaacatcaaccagt 260

                                                                       
Query: 61  ttgcttaaataccccatgttctaggaaacttctgtcattgcactttcggtatcatgaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ttgcttaaataccccatgttctaggaaacttctgtcattgcactttcagtatcatgaatg 320

                                                                       
Query: 121 aattatcatagggaccacagtgacatgaaaaataaaggcattaggtcaaaaaagtctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattatcatagggaccacagtgacatgaaaaataaaggcattaggtcaaaaaagtctcac 380

                                                                    
Query: 181 aagaatgaattttaacataccaggtgcatgctcaacttgtctgtacttcagtacctc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaatgaattttaacataccaggtgcatgctcaacttgtctgtacttcagtacctc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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