Query= MSMg01no444_p12.b1 MSMg01no444_p12.b1 CHROMAT_FILE:
MSMg01no444_p12.b1 PHD_FILE: MSMg01no444_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:01 2005
(419 letters)
>mm_chr6_78707609_78708427
Length = 819
Score = 716 bits (370), Expect = 0.0
Identities = 405/422 (95%), Gaps = 12/422 (2%)
Strand = Plus / Plus
Query: 2 agtgccctctactggcctccatgggtactgcacatacatggtgcacatacatatatgtaa 61
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 206 agtgccctctactggcctccatgggtactgcacatacatggtgcatatacatatatgtaa 265
Query: 62 gcagaacacttatcgtcataaaatagaagtaagtaaaaatagagtaaatggaaaactaat 121
||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 266 gcagaacacttatcgtcataaaatagaagtaagtaaaaa---a-taaacggaaaactaat 321
Query: 122 ttaaaataaaagggttggagatataacttagaggtagactttgcttagcatgtatacaga 181
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 ttaaaataaaagggttggagatataacttagaggtagagtttgcttagcatgtatacaga 381
Query: 182 atttaattcaatacccaggactgtggggaaaaagtcaacacatcagttgggtgatacagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttaattcaatacccaggactgtggggaaaaagtcaacacatcagttgggtgatacagt 441
Query: 242 ataaattctcat----gttttaagctatctggaaacagctcctctatttatatgtgtcct 297
|||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct: 442 ataaattctcatggaag----aagctatctggaaacagcttctctatttatatgtgtcct 497
Query: 298 aactaatgtattacatctagttttactgactattattctaactacattgcataatttaaa 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 498 aactaatgtattacatctagtttcactgactattattctaactacattgcataatttaaa 557
Query: 358 ttattttatttcctgatagccctgtattaaaataccattgaccttcttctttctgaatga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttattttatttcctgatagccctgtattaaaataccattgaccttcttctttctgaatga 617
Query: 418 gc 419
||
Sbjct: 618 gc 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_p12.g1 MSMg01no444_p12.g1 CHROMAT_FILE:
MSMg01no444_p12.g1 PHD_FILE: MSMg01no444_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:02 2005
(540 letters)
>mm_chr6_78772997_78773936
Length = 940
Score = 984 bits (509), Expect = 0.0
Identities = 532/545 (97%), Gaps = 10/545 (1%)
Strand = Plus / Minus
Query: 1 accatcagatcaccgttagtcatgacatggaccaaagcaagccaggacaaggagagatgg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 923 accatcagatcaccgttagtcatgacatggaccaaagcaatccaggacaaggagagatgg 864
Query: 61 caagtatcagggcacttgactaggtagtagcagactagttgcattagaatagatctgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 caagtatcagggcacttgactaggtagtagcagactagttgcattagaatagatctgaat 804
Query: 121 ttgctcagctattattgctggccgcttatttataaaaatactaggtatctgtgtctttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttgctcagctattattgctggccgcttatttataaaaatactaggtatctgtgtctttta 744
Query: 181 tttttttctggagctaaaatgtgctagaacaggcaaaacaaaatgccctgtagctatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tttttttctggagctaaaatgtgctagaacaggcaaaacaaaatgccctgtagctatttg 684
Query: 241 g-----tttttaaggaggtataggcttcccttccccccaagaaatattattgcaggtgta 295
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggggaa-----aaggaggtataggcttcccttccccccaagaaatattattgcaggtgta 629
Query: 296 cattgtcaggaagaagaggcctgaggaactaaagtcactctctttcaaagggtgtgaagc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cattgtcaggaagaagaggcctgaggaactaaagtcactctctttcaaagggtgtgaagc 569
Query: 356 taagtctcaaatgagtcacagaagctgcagccaggtcagcagcttattattacaactgaa 415
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 568 taagtcttaaatgagtcacagaagctgcagccaggtcagcagcttgttattacaactgaa 509
Query: 416 atctcagctacattactgaatagacatttaggatctgagatgctatacaaatagagaatg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atctcagctacattactgaatagacatttaggatctgagatgctatacaaatagagaatg 449
Query: 476 ttgaatttcagtagtggaatatgatggttcttcatagagacagtgcagtggggctgaaag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttgaatttcagtagtggaatatgatggttcttcatagagacagtgcagtggggctgaaag 389
Query: 536 gaacc 540
|||||
Sbjct: 388 gaacc 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
