BAC Information

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BAC

Clone NameMSMg01-445E12
Chromosome6 (Build37)
Map Location 146,713,143 - 146,713,577
singlet/doubletsinglet
Overlap geneStk38l
Upstream geneRassf8, Bhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175
Downstream geneLOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445E12.T7 (MSMg01no445_e12.b1)MSMg01-445E12.TJ (MSMg01no445_e12.g1)
ACCAG534249AG534250
length730727
length of high quality
(start - end)
94 (73 - 166)435 (72 - 506)
definitionCHROMAT_FILE: MSMg01no445_e12.b1 PHD_FILE: MSMg01no445_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:25 2005CHROMAT_FILE: MSMg01no445_e12.g1 PHD_FILE: MSMg01no445_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTTTTCGTACTGACCGCGGAATTAGAT
ATATCAAAAAACAGCAAAAAACAAAAACCTGGGCTGGAGTCTAACTCGGC
TACATGCCGAGAGTGGGTTCCTAAGTCTTGTGGGAATCACAGTCCTCACA
TCTGCTCTCACTGAAAGATACTTCCTCCTCCTCCTCGNNNNNNNNNNCTG
GGGGATNTAATGGCACACAAACTTCAACCCCCTCTCTTTGTTNTCTCAAT
AAAATTCTGGTAAGAAGAACTATTTTTAGNNNNNNNNNCACTTGCCATAT
GTTTTCGTTCATTCGNGGGCCCTCACAACGNACCACAAAGTAATTTTTTT
TTTTTNCCCCCAATTCCGTCCCAAAGTTGGATTGGTGGGCTAGGAAGCTG
GNNTGTTCGAAAAATTGGAANGGANGGNAAATAATGCCATACCCCTTCCT
GAAAATTGGAAAAATGGCCAATTACGGGGGAGCTCCAAAAAAAAAAAAAA
AAACTTTTTGTTCCAAAAATATTTTTTTTTCCCTTTCCCCACATTTTAAA
AAAAAGAAAGGGTCTGTTTCTTTTTCCCTCTCCCCAAAATAAATCCCCCC
CAACACCTAAAAAACCCTTCCCTTTTTTTTTTTTTTTTTTCTAACTTTCC
CCCTTTTAAATAAAAAACCACAAATCCTTATATAACTTTTCTCCCGAGAA
AAGAGAGTTTCCGTTAAAAAAGATAAAAAT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTTTAATGATACCCAGACTTCTAATTA
GACACCTAATTAGACATCTAAAGTTAGACAGATGAGCAGGACAGGGAGTG
GCTCAGCTGTGAGCTGTATTGGGAGCCGTGTGTCTGAGGTGACAGCAGTG
CTGTAATTTGTCACCTGAGCTAGTCTGTGAGAGGCTGATGGGGCCACTGT
ACTTGAGTTGGAGTTGAATACCTTCAGTGACTTCCTTATTCCACTGTGTG
CTGCCTCTCTTGTGAACTATCCCTGTATCATGAACTTAAATTTTATGAGA
TGAGAGGTCAGTGAGGTTAGGACAAGAAAATTAATGATTTGCAAATGCAG
CCTTCAGGTATTTAAAAGTGTTGCTAATTAATAGTTCTTATTTTGTTATC
TTTGTTGACTCAGTATTGCTGTGGGGGTTCTGACTTGGAGGGAGGGTTTA
GGGAGTTGACTTGCTTGGTTGTTTTGTCGTTTTTGCCTCGCTTGCTCTCT
TTCCTTTTTCCCATCTTTTTTTTTTCTTCTTCCGGTCGCCGCTTTTTTAT
GTGCCCTTTTCTTCCCTTCCCCGTTTTTGCTCTTTTTTTTTTTTTTTACA
TCCCATCTCCTCCATTTTATATTTCCCCGTTTATTTTACTTTTTTGCATT
TACTACCCTCTTCTAACCCCCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_e12.g1 MSMg01no445_e12.g1 CHROMAT_FILE:
MSMg01no445_e12.g1 PHD_FILE: MSMg01no445_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:25 2005
         (435 letters)



>mm_chr6_146712943_146713777
          Length = 835

 Score =  826 bits (427), Expect = 0.0
 Identities = 433/435 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttaatgatacccagacttctaattagacacctaattagacatctaaagttagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttaatgatacccagacttctaattagacacctaattagacatctaaagttagacag 260

                                                                       
Query: 61  atgagcaggacagggagtggctcagctgtgagctgtattgggagccgtgtgtctgaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagcaggacagggagtggctcagctgtgagctgtattgggagccgtgtgtctgaggtg 320

                                                                       
Query: 121 acagcagtgctgtaatttgtcacctgagctagtctgtgagaggctgatggggccactgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcagtgctgtaatttgtcacctgagctagtctgtgagaggctgatggggccactgta 380

                                                                       
Query: 181 cttgagttggagttgaataccttcagtgacttccttattccactgtgtgctgcctctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 cttgagttggagttgaataccttcagtgacttccttattccactgtgtgctgcctctctc 440

                                                                       
Query: 241 gtgaactatccctgtatcatgaacttaaattttatgagatgagaggtcagtgaggttagg 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaactatccctgtatcatgaacttaaattttatgagatgagaggtcagtgaggttagg 500

                                                                       
Query: 301 acaagaaaattaatgatttgcaaatgcagccttcaggtatttaaaagtgttgctaattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagaaaattaatgatttgcaaatgcagccttcaggtatttaaaagtgttgctaattaa 560

                                                                       
Query: 361 tagttcttattttgttatctttgttgactcagtattgctgtgggggttctgacttggagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagttcttattttgttatctttgttgactcagtattgctgtgggggttctgacttggagg 620

                          
Query: 421 gagggtttagggagt 435
           |||||||||||||||
Sbjct: 621 gagggtttagggagt 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)