Query= MSMg01no445_g18.b1 MSMg01no445_g18.b1 CHROMAT_FILE:
MSMg01no445_g18.b1 PHD_FILE: MSMg01no445_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:37 2005
(492 letters)
>mm_chr6_134099978_134100869
Length = 892
Score = 901 bits (466), Expect = 0.0
Identities = 483/490 (98%), Gaps = 4/490 (0%)
Strand = Plus / Minus
Query: 5 gaattcacgcgttccc--tctgtgtgtgaggatctgtacctgcaaactcactgtttctgc 62
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaattcacgcg--ccccttctgtgtgtgaggatctgtacctgcaaactcactgtttctgc 635
Query: 63 ccaaggacacaaaaggcgtggatcctcagcatgatgctggccttcagatgctcagcttgt 122
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ccaaggacacaaagggcgtggatcctcagcatgatgctggccttcagatgctcagcttgt 575
Query: 123 ctggtcaagatcatcgctggcatcatctagagatagcacccgagcatgctaagcagtagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctggtcaagatcatcgctggcatcatctagagatagcacccgagcatgctaagcagtagg 515
Query: 183 actggatgctcttctcagcctcggggctccaggtttaaaatactttgtcttcatcaagca 242
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 actgggtgctcttctcagcctcggggctccaggtttaaaatactttgtcttcatcaagca 455
Query: 243 agggacctggattttgtcctgcttcactcgtctatctcctgagcaaaattacagacgtta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agggacctggattttgtcctgcttcactcgtctatctcctgagcaaaattacagacgtta 395
Query: 303 tttccaacttgatccttggccttccacttcagctacagatccctccgatacaagggaatt 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 394 tttccaacttgatccttggccttccacgtcagctacagatccctccgatacaagggaatt 335
Query: 363 gagaaatttaataaactaatttgcatgaagaaaggacgtgggttagtcaccatctctatc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gagaaatttaataaactaatttgcatgaagaaaggacgtgggttagtcaccatctctatc 275
Query: 423 caaggcactacctacctacattcctgactacttttaaaaagtggggctaggggctcagaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 caaggcactacctacctacattcctgactacttttaaaaagtggggctaggggctcagaa 215
Query: 483 gaattgctta 492
||||||||||
Sbjct: 214 gaattgctta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_g18.g1 MSMg01no445_g18.g1 CHROMAT_FILE:
MSMg01no445_g18.g1 PHD_FILE: MSMg01no445_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:37 2005
(461 letters)
>mm_chr6_133967816_133968676
Length = 861
Score = 837 bits (433), Expect = 0.0
Identities = 454/461 (98%)
Strand = Plus / Plus
Query: 1 ccactaagtggctagaatttatccatatggctagactgtaatttgtgaatcaatacccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactaagtggctagaatttatccatatggctagactgtaatttgtgaatcaatacccaa 260
Query: 61 atcaataaaatgtgtaccttatttaaagaaatgccgttggctgcgtcagaatctctaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaataaaatgtgtaccttatttaaagaaatgccgttggctgcgtcagaatctctaatc 320
Query: 121 ttggtatcacagatttgacaatggatctgctgtgcctcctactttgaggtggtcacactt 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ttggtatcacagatttgacaatggatctgctgtgcctcctactttggggtggtcacactt 380
Query: 181 tgagctgctgagttctttcaatgcttgctttggaggtatcacattctccctgtctaaaac 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tgaactgctgagttctttcaatgcttgctttggaggtatcacattctccctgtctaaacc 440
Query: 241 caaaagaagaaaggagaaaaaattgcctgttagaagagagaagtggggacatacttgtga 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 caaaagaagaaaggagaaaaaattgcctgttagaagagagaagtgggggcatacttgtga 500
Query: 301 gaccaagcgactgattccatgtcctgccaatgatctaggtgctccaaaggacctggtcac 360
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccaagcgattgatttcatgtcctgccaatgatctaggtgctccaaaggacctggtcac 560
Query: 361 acaaataaaaatactcagcccttgaataagatacattttatggcatattgtgctcacaag 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 acaaataaaaatactcagcccttgaataagatacatttgatggcatattgtgctcacaag 620
Query: 421 cagccaaggaaatctccaatctactttcatctacccctgtt 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagccaaggaaatctccaatctactttcatctacccctgtt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
