BAC Information

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BAC

Clone NameMSMg01-445L02
Chromosome6 (Build37)
Map Location 38,312,225 - 38,480,162
singlet/doubletdoublet
Overlap geneRpl30-ps1, Ttc26, D130059P03Rik
Upstream geneCreb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1
Downstream gene3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L02.T7 (MSMg01no445_l02.b1)MSMg01-445L02.TJ (MSMg01no445_l02.g1)
ACCAG534563AG534564
length740749
length of high quality
(start - end)
516 (37 - 552)408 (67 - 474)
definitionCHROMAT_FILE: MSMg01no445_l02.b1 PHD_FILE: MSMg01no445_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:59 2005CHROMAT_FILE: MSMg01no445_l02.g1 PHD_FILE: MSMg01no445_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(38,479,650 - 38,480,162)(38,312,225 - 38,312,631)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTA
TGTTTCGAATCCTTCCTACCTTCCTTCCCACCTTCCTTCTCCCTTCCTTC
CTTCATTTACTTAATGTCTTTCATTGATTATACAGAACCCCTCTGGAGCT
TTGCCATTCTCTCCAGCGCTCCCAGGTCCGTTCTTTCCTTTCAATTTCCT
AAGTCCATTTTAAAAAAGCATCTCCCTATGGGCCTGCCCTTTTCTAGCTT
TTCTGGGGACACTGCAAGCTCTGCAGACTCCTCCGTCAATGCCTGATCTC
CCTTTGGAGTTTCTGTGGGTCCTTCTCGGAGGACTCTGATCACAGCCATG
CTTCAGGTTCCCATCTTCGATGGTGATGCCTTGTTCGACTTGGTTCTGTA
GCTTCTCGCCTGTTCCAGCAGCTCGTAGATGTTGGGGCAGACCAACGAGA
GGTGATAGACCTGGGCCCAGAAAGTAGCAGAGTTGGTCAGCCCTCGGGTC
TCCCGGGGTGCCTTCCAGAGCTGCAGGTCTTCCTTGGAATGGGTACCTTT
GCAAACAATCTGCTCATAGCAACTAGGCCAATTAACCACAGATTTTTCTC
TCATCTGATTTTATATCAACTTCTTCCCTAGGGCTCTTGAGTTTGTAATT
TTCCCTTTTCAAAACCTACTTTTAATCCATATTAAAATGTTTTAAATGCT
TTTAACCTCTCTTTTAATCCACCTTCTCTCCTGAACGTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTGCAGAGTTAAAAGAAAATGTGTGCTTGCTG
TTTCCTAAGAATCAAAGGGCTGGGGTCACAGGATTCTGATTCCTAGGATA
ATCAAAGGGGACCTGGAATTAAATAACTGAATTAGTACGTAAATAAAAAC
TGGGGTTTGGGGTCTACATGGAATGAGCTAACAGAAAGCGAAAGCAGCTC
TTTAGAATTTTCTCTGGCAAGAGCTGTGCTATCTGGAGATCTCTGGAGAG
CAAACACAACTCTGCAAGAATGTTTTTCTAACAGGATTTTTGACTTCGTC
GGAAGATCCAATAATTTTTATAGCGGCTTTTCTGACTTTGGTCAGAAAAC
TCATGAGCTTTTCAGAGAGGTTTTAGAATTTTTGCTAACAGAGAGAGTTG
TCTCAACTGAGCAGTCTGGAAAATCATCTCAGCAGAACCTAGTTGCTCAG
CAGCTCCCGTCAGCAGCTTCTCTTCCAGAGGACACAGATTCAATTGTCTG
TAGCCCCACCACTGTCTGTAACTCCAGTTCCAGGGTATCTGACAGCCTCA
CACAGACATCTTTATAAGCCTATCACTCCTGCACATATAATAAAGTAAAT
CCTTTAAGAATATTTTTTAGGCCTGGAACAGCTGGCCTTCCCGGTTAACA
TATTCCATTTGTCCTTTCTTATCTATTCCCCCTTTCATTCCCCCCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l02.b1 MSMg01no445_l02.b1 CHROMAT_FILE:
MSMg01no445_l02.b1 PHD_FILE: MSMg01no445_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:59 2005
         (516 letters)



>mm_chr6_38479545_38480460
          Length = 916

 Score =  946 bits (489), Expect = 0.0
 Identities = 507/513 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatgtttcgaatccttcctaccttccttcccaccttccttctcccttcctt 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggaattcactatgcttggaatccttcctaccttccttcccaccttccttctcccttcctt 559

                                                                       
Query: 64  ccttcatttacttaatgtctttcattgattatacagaacccctctggagctttgccattc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttcatttacttaatgtctttcattgattatacagaacccctctggagctttgccattc 499

                                                                       
Query: 124 tctccagcgctcccaggtccgttctttcctttcaatttcctaagtccattttaaaaaagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctccagcgctcccaggtccgttctttcctttcaatttcctaagtccattttaaaaaagc 439

                                                                       
Query: 184 atctccctatgggcctgcccttttctagcttttctggggacactgcaagctctgcagact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atctccctatgggcctgcccttttctagcttttctggggacactgcaagctctgcagact 379

                                                                       
Query: 244 cctccgtcaatgcctgatctccctttggagtttctgtgggtccttctcggaggactctga 303
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 378 cctccgtcaatgcctgatctccctttggagcctctgtgggtccttctcggaggactctga 319

                                                                       
Query: 304 tcacagccatgcttcaggttcccatcttcgatggtgatgccttgttcgacttggttctgt 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcacggccatgcttcaggttcccatcttcgatggtgatgccttgttcgacttggttctgt 259

                                                                       
Query: 364 agcttctcgcctgttccagcagctcgtagatgttggggcagaccaacgagaggtgataga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 agcttctcgcctgttccagcagctcgtagatgttggggcagaccaacgagaggtgctaga 199

                                                                       
Query: 424 cctgggcccagaaagtagcagagttggtcagccctcgggtctcccggggtgccttccaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cctgggcccagaaagtagcagagttggtcagccctcgggtctcccggggtgccttccaga 139

                                            
Query: 484 gctgcaggtcttccttggaatgggtacctttgc 516
           |||||||||||||||||||||||||||||||||
Sbjct: 138 gctgcaggtcttccttggaatgggtacctttgc 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no445_l02.g1 MSMg01no445_l02.g1 CHROMAT_FILE:
MSMg01no445_l02.g1 PHD_FILE: MSMg01no445_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:59 2005
         (408 letters)



>mm_chr6_38312025_38312832
          Length = 808

 Score =  702 bits (363), Expect = 0.0
 Identities = 396/407 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgcagagttaaaagaaaatgtgtgcttgctgtttcctaagaatcaaagggctggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgcagagttaaaagaaaatgtgtgcttgctgtttcctaagaatcaaagggctggggt 260

                                                                       
Query: 61  cacaggattctgattcctaggataatcaaaggggacctggaattaaataactgaattagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaggattctgattcctaggataatcaaaggggacctggaattaaataactgaattagt 320

                                                                       
Query: 121 acgtaaataaaaactggggtttggggtctacatggaatgagctaacagaaagcgaaagca 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 acgtaaattaaaactggggtttggggtctacatggaatgagctaacagaaagcaaaagca 380

                                                                       
Query: 181 gctctttagaattttctctggcaagagctgtgctatctggagatctctggagagcaaaca 240
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gctctttagaattttctctagcaagatctgtgctatctggagatctctggagagcaaaca 440

                                                                       
Query: 241 caactctgcaagaatgtttttctaacaggatttttgacttcgtcggaagatccaataatt 300
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 441 caactctgcaagaatgtttttctaacaggatttctgacttcatcggaagatccaataatt 500

                                                                       
Query: 301 tttatagcggcttttctgactttggtcagaaaactcatgagcttttcagagaggttttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tttatagcggcttttctgactttggtcagaaaactcatgagcttttcagagagcttttag 560

                                                          
Query: 361 aatttttgctaacagagagagttgtctcaactgagcagtctggaaaa 407
           ||||||||||| ||||||||| ||||||||| |||||||| ||||||
Sbjct: 561 aatttttgctagcagagagagctgtctcaaccgagcagtccggaaaa 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)