BAC Information

Click to search

BAC

Clone NameMSMg01-445L15
Chromosome6 (Build37)
Map Location 5,169,178 - 5,169,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1
Downstream genePon3, Pon2, Asb4, Pdk4, Dync1i1, Slc25a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L15.T7 (MSMg01no445_l15.b1)MSMg01-445L15.TJ (MSMg01no445_l15.g1)
ACCAG534589AG534590
length7511,132
length of high quality
(start - end)
468 (58 - 525)---
definitionCHROMAT_FILE: MSMg01no445_l15.b1 PHD_FILE: MSMg01no445_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:02 2005CHROMAT_FILE: MSMg01no445_l15.g1 PHD_FILE: MSMg01no445_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTC
TTTCGCACTCTTGGATTTTCTAGGACATGGTTCACTATCCCACTCCCCTT
GGATTTAGCTTATGCTTCTTTTATTCAGTTAAAGCCTTAATAGTCAAATG
TTAAGTAATCCAGTAGTTATGATGCATAGGATAAAAAAGAAATTATCATA
TTTTTCAAAATGGACCGAGTTACAAGTGTGCATGGCTTTTAATCATTAGT
TTTATTTGGAGTCTTCTCAATAACTACATTTTGTGCATGCATGGAGTTGT
GCATGTTTGTTTGCATATGTACGTGAAGGCCAGAAGACAGCTTCTGGGGT
TGCTCTGTAGGGCATCAACTACAATGTGGTGTTGCTGTTGTTGTTGTTTG
AGGCAGCTTCTCACTGGCCTAAAGTATACTAAATATGCTAGGCTTTTAGC
CAGAAAGTACCAGGAATCTCCTTGCCTGGTGCTGGCACTACAAACACAAA
CCACACACCTAGCTCTTTTATGTGGGTGTTGGGGATCAAAGTTTGTTCCT
CATGCTTGCAAAGGCAATACTCTAAACTGTTACCTTCTTCGTTACTTATG
GCTGAGTTTTTGACCCTTTAAGCTGAATTTTTCTTTTTTCTTTCATCTGT
ATTTTATTTTTTCTTTGATCCCCTCGCCATTTCTATTTCCTTCAGACGGC
TTGAGTATAAACTTGATTGTTTTTTTCCACTTTTTTTAACACGCACTTAT
T
TTATTATTTATGTCGGAGCGCGGCGTGCTCTCCCTTCTGTGTCGCCCGCG
CCACCCANNAGTTTGTCCCCGGGGGTGTGTGAATTCCATACCATGTACGA
CTCAACCGCCTCCANCCACACCCTCCACGCCCATCCACTCGTCACGAGCG
CGCGGCTCTGGTGTATGTGCGGTCGTTGGTCGGTCGCGCTTCGACCTGAT
TTTTCTTTTTCCCGTGTCGCGATGTAGCCGGTGCGGAGGCTTGTACACAC
TCTTTAACGACCCGGGCCGTTTGTGATGTGCTTCCGCCCCGATTAGGCGA
TATCCTGTGGCATACAGNTTTTTTTTTGGACCGTCCTGTTATGCCTCCGC
GGGCGCGGCGTGTGTGTGTTGGTGTGTGTGGGTGTGCTGCGTCGTGGTGT
GTGGCGGCAGGCGTGCGGTGTTCCGGGTGCCCTTGACACTTGTGCTGTCG
TGCGTGTGATTGCGAGGGATAGTGGATTCATCACAGACGTAGTGTGTCTT
CGCGCCCGATGTTGTGTTATCGTGCATGATCCCCGGCGCAGCGCCCCCAG
CAGTCCCGCTCGTGCTGTGTTGCGCGTGTGCTGTTGCCTTCGTTGTGCGT
TGGTGGGTGTGGTGGTTGTACGCGATCGAGCAGCGAGTAGTGTGTGCCTC
CGTGTTGCTGTTGGTCGCGCCTCGTCGTGCGTTCTTCTGTCTTGGTGCAA
TTATCTATTACTCTGCTCTCCTCCTAACATGAACGCCGCCTTGTGTGGAG
AACTTGTTTGTACACCGCGCGCGGAGGTATTATCAGGCGTAGGGCGCGCT
TAGATGGTGATGTGCTGATGATGTGCACGCTNCTCGCTCTCCTCGTCCNC
GCGCCCGTTCTGCCGTGTGAGTGTGTTCGTTGTTGTGGAGTTGCCGCGCG
CGGCTCCCGCATGGTCTGGTGTCACTCGCTCCTATCTCGTGGTACTGCGA
TGACGGCACGTTCGTTTCTCGTTGTTATGTGACGTTATCGTCCCGACAGC
TTCCTCCTCATATCTTGTGGTACCTCGCTCTCGCCTCTGTGTAGTGAGCC
ACTTTTGTGCTGCTGATGTGTGATGCCTGTTGTAGGCTCTTGTTCTCTTG
ATAGTCTATGCTCTCTCTCTGCTTATTAGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l15.b1 MSMg01no445_l15.b1 CHROMAT_FILE:
MSMg01no445_l15.b1 PHD_FILE: MSMg01no445_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:02 2005
         (468 letters)



>mm_chr6_5168978_5169845
          Length = 868

 Score =  859 bits (444), Expect = 0.0
 Identities = 462/468 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttggattttctaggacatggttcactatcccactccccttggatttagcttatgctt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttggattttctaggatatggttcactatcccactccccttggatttagcttatgctt 260

                                                                       
Query: 61  cttttattcagttaaagccttaatagtcaaatgttaagtaatccagtagttatgatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttattcagttaaagccttaatagtcaaatgttaagtaatccagtagttatgatgcat 320

                                                                       
Query: 121 aggataaaaaagaaattatcatatttttcaaaatggaccgagttacaagtgtgcatggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggataaaaaagaaattatcatatttttcaaaatggaccgagttacaagtgtgcatggct 380

                                                                       
Query: 181 tttaatcattagttttatttggagtcttctcaataactacattttgtgcatgcatggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatcattagttttatttggagtcttctcaataactacattttgtgcatgcatggagt 440

                                                                       
Query: 241 tgtgcatgtttgtttgcatatgtacgtgaaggccagaagacagcttctggggttgctctg 300
           |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcatgcttgcatgcatatgtacgtgaaggccagaagacagcttctggggttgctctg 500

                                                                       
Query: 301 tagggcatcaactacaatgtggtgttgctgttgttgttgtttgaggcagcttctcactgg 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tagggcatcaactacaatgtggtgttgttgttgttgttgtttgaggcagcttctcactgg 560

                                                                       
Query: 361 cctaaagtatactaaatatgctaggcttttagccagaaagtaccaggaatctccttgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 cctaaagtatactaaatatgctaggcttttagccagaaagtaccaggaatctccttgccc 620

                                                           
Query: 421 ggtgctggcactacaaacacaaaccacacacctagctcttttatgtgg 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtgctggcactacaaacacaaaccacacacctagctcttttatgtgg 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)