BAC Information

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BAC

Clone NameMSMg01-447C10
Chromosome6 (Build37)
Map Location 128,787,276 - 128,787,838
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d
Downstream geneLOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447C10.T7 (MSMg01no447_c10.b1)MSMg01-447C10.TJ (MSMg01no447_c10.g1)
ACCAG535677AG535678
length756786
length of high quality
(start - end)
590 (43 - 632)347 (74 - 420)
definitionCHROMAT_FILE: MSMg01no447_c10.b1 PHD_FILE: MSMg01no447_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:54 2005CHROMAT_FILE: MSMg01no447_c10.g1 PHD_FILE: MSMg01no447_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGCGTGTATCCCTGGGCTCATTCTCCCCTCCCCCTCCTTCTCCCCCT
TCCCCTCCTGTGCCTCACCCAGAAATGGTCTTCCCCATTGTTAAGATGGA
TCGTCCCACACTCATTAATGTTGCTGAGAAGATCCCTCAAATGCCTTCTC
AGAGGGTAACCTTAGCCTGGACAATCTCTCACAGATGTGCCCTGAGCCGG
GTCTCCTGGGTGATTCTAGGCAGGACAGTAGAGGCGGAAGAGCAGAAGTA
GGGACAGCGGAGTTGTCTCTTCCTAAGGCTTTGAAATCAGCCACTGGGCT
CTGGCTTGATAGTTAAAGAAAGCCAGAGGAACTGTTTGAGAAGAAAGTTG
GCTAGGAAGCAGGAAGGGGAGGCTGAAGAATAAAGGGCCAGGAGGAGCTA
CAGAAGAGAACCTGCAGCGCCTAGCTCTCAGGAGTGTTCTGGGAAGCTAA
CAAGACTATTTACAGTATTTGCATGCATGTAGTTTGTGTATTCACTATGA
ATACGTAATGATAAATGACACAGAAACTGGTTTGTGTGATTTCTCTCTTC
CAATTCACAGAGGTCTGCCTGCCTCTGCTTCAGAGTGCTAGGATTATGAG
TACCTGGATCCAGCAAAGGGAACTGTAATATTCTATCCCCACAGACCTCA
TGCAAGTGTTATTGACCCATTAATACACTAATGGTTACCATGCCTACCGA
CCATTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTATATTTTAGATATTAGCCCACT
GTTGAATGAAGGATAGGTAAAGATAATTTAAATCTGTAGGTTGCCATTTT
GTCTTATTGATATTGTCCTTTATCTTATAGAAGCTTTTTAGTTTCATGAG
GTCCCATTTATCAATTGCTGATCATAGAGCCTGGGCCATTGGAGTTCTGT
TCAGGAAACTGTCTACTGTGACAATGAGTTCAAGGCTATTTCCCACTTCC
TCTTCTATTAGATTCAGTGTATCTGGTTTTATGTTGAGGTCCTTGATATA
TTTGAACTTGAGCATTGTGCAGGGTAATAGATATGGATCTATTTGGATTC
TTCTACATGCACATATCCAGTTAGACCCAAATCATCTGCTGAAGATAGTT
TCATTTTTCCAGTATATGATTTTGCCTTCTTTGTCAAAAATCAAGCGTCC
ATAGTTATGTGGTTTTATTTCTGGGACATTGATTCTACTCTTTTGATCCA
CCTGTTTGCTTTCTTTATGAATTCCATGTATCTCTTATTCTTTAAATACC
CTTCCCATTGTCCTTTGTTTCCCTCTACTTTCTCCTTCTTTATTTTCTTC
CAACTGCTACTATGTTCTTTTGTTTACTATGGTTACCTAATAATACTTTT
ATTCCTTTCCTCTTCGCTTAATTCTCCTTCTATATTCATCCCGTCTTTAT
CTTCTTACGTTCACTTTCATCTTCTTTTTCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_c10.b1 MSMg01no447_c10.b1 CHROMAT_FILE:
MSMg01no447_c10.b1 PHD_FILE: MSMg01no447_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:54 2005
         (590 letters)



>mm_chr6_128786849_128787838
          Length = 990

 Score = 1042 bits (539), Expect = 0.0
 Identities = 557/563 (98%)
 Strand = Plus / Minus

                                                                       
Query: 28  ctcattctcccctccccctccttctcccccttcccctcctgtgcctcacccagaaatggt 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ctcattctcccctccccctccttctcccccttcccctcctgtgcctcacccagaaatggt 931

                                                                       
Query: 88  cttccccattgttaagatggatcgtcccacactcattaatgttgctgagaagatccctca 147
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 930 cttccccattgttaagatggatcttcccacacccattaatgttgctgagaagatccctca 871

                                                                       
Query: 148 aatgccttctcagagggtaaccttagcctggacaatctctcacagatgtgccctgagccg 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aatgccttctcagagggtaaccttagcctggacaatctctcacagatgtgccctgagccg 811

                                                                       
Query: 208 ggtctcctgggtgattctaggcaggacagtagaggcggaagagcagaagtagggacagcg 267
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 810 ggtctcctgggtgattctaggcaggacagtagaggctgaagggcagaagtagggacagcg 751

                                                                       
Query: 268 gagttgtctcttcctaaggctttgaaatcagccactgggctctggcttgatagttaaaga 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gagttgtctcttcctaaggctttgaaatcagccactgggctctggcttgatagttaaaga 691

                                                                       
Query: 328 aagccagaggaactgtttgagaagaaagttggctaggaagcaggaaggggaggctgaaga 387
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 690 aagccagaggaactgtttgagaagaaagttggctaagaagcaggaaggggaggctgaaga 631

                                                                       
Query: 388 ataaagggccaggaggagctacagaagagaacctgcagcgcctagctctcaggagtgttc 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ataaagggccaggaggagctacagaagagaacctgcagcgcctagctctcaggagtgttc 571

                                                                       
Query: 448 tgggaagctaacaagactatttacagtatttgcatgcatgtagtttgtgtattcactatg 507
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 570 tgggaagctaacaagactatttacagtatttgcatgcatgtagtttgtgtattcaccatg 511

                                                                       
Query: 508 aatacgtaatgataaatgacacagaaactggtttgtgtgatttctctcttccaattcaca 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatacgtaatgataaatgacacagaaactggtttgtgtgatttctctcttccaattcaca 451

                                  
Query: 568 gaggtctgcctgcctctgcttca 590
           |||||||||||||||||||||||
Sbjct: 450 gaggtctgcctgcctctgcttca 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)