BAC Information

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BAC

Clone NameMSMg01-448B07
Chromosome6 (Build37)
Map Location 73,442,357 - 73,442,602
singlet/doubletsinglet
Overlap genenone
Upstream geneSh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik
Downstream geneLOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448B07.T7 (MSMg01no448_b07.b1)MSMg01-448B07.TJ (MSMg01no448_b07.g1)
ACCAG536379AG536380
length796751
length of high quality
(start - end)
248 (69 - 316)415 (82 - 496)
definitionCHROMAT_FILE: MSMg01no448_b07.b1 PHD_FILE: MSMg01no448_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:12 2005CHROMAT_FILE: MSMg01no448_b07.g1 PHD_FILE: MSMg01no448_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAAT
TCACAGATGACAGCCCACATACATATAACTATCACTTATCAGCTCAAATA
ACCTGTAACTTAAAAGGGAGCAGATAGGGACATCTAAAATGTGTTGTCAC
TACTGTTTCTTGGTGCCTTGAGCCCTAGCAGGACTTCTTCTGAGAGATAC
ATACAGAGCCTGGACTTAGGCTGTTCATTGGTGCATGTAAGCTCACAGTT
TGCTTATCTCTAGTCTTCTTTTCCAAGTCTACAGTTCCTTAATGTCAGCC
TCAATTATGATTTACTTTTTTTTAGTGTGGCATAGCCCTGAACAGACTGC
AGTTCCTCTGTCCTTTACAATTCTGCCTTCTTTATCATCTGAACCTCTTC
CCCTGGGTTTCCTGCTTCTTCTGAGGGATTTTAATATTTGGCCGCCATAA
TCTCACTATGCTTTTTGGCCCACATGTTTATTGTGACCCCTACATATTGA
ATTTATCCCCTTCTCCCCTCCGTCTTTCTGGTTCGTTTTTCTTGCCCCCC
TCTTTCTCCCTTCGGCTTCCCCTTTTTATTTTCCCTTTTTTCTCTTTAAC
TTTTTTGAACTGTTTAACAACTTCTCCTGCGGTTTTACTGTTTCTCTCTT
TTCCCTTCGTATTTTTATTCTACTCTTACGCCCCAGTTTTTACATATTTT
CGCGTCGCCCACCTTTCACTTTCACCCTTTCCTTCTCCCATTCGCCTTTA
TCTTTCCTCTCCTTTTTTCCCACATCTCTTTCACTTCCTCTTTCTN
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTTAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCACGCTTGTACAACCACTC
TGGAAATCAGTCTGGCTGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAATATGTGGTACATCTACCCCATGGAGTACTACTCACGTATTAAAAAGA
ATGAATNTATGAAATTCCTAGCCNAATGGATGGACCCGGAGGGTCTTTTC
TCTGAGTGAGGTAATATTATCCTTTTGGACCTCTCCCCCCTTGCCCTCTC
TGTTTAGTGGACTATAAGCCCCCACCTCAGGTATTCTAAAAACAACTGTT
CTACTGGTCCTAACCCTTCGTACCCTCCCTGAGAAGAGTGTATGGGCGTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_b07.b1 MSMg01no448_b07.b1 CHROMAT_FILE:
MSMg01no448_b07.b1 PHD_FILE: MSMg01no448_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:12 2005
         (248 letters)



>mm_chr6_73442157_73442804
          Length = 648

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacatataactatcacttatcagctcaaataacctgtaacttaaaagggagcagatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacatataactatcacttatcagctcaaataacctgtaacttaaaagggagcagatagg 260

                                                                       
Query: 61  gacatctaaaatgtgttgtcactactgtttcttggtgccttgagccctagcaggacttct 120
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gacatctaagatgtgttgtcactactgtttcttggtgccttgatccctagcaggacttct 320

                                                                       
Query: 121 tctgagagatacatacagagcctggacttaggctgttcattggtgcatgtaagctcacag 180
           || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tccgagaggtacatacagagcctggacttaggctgttcattggtggatgtaagctcacag 380

                                                                       
Query: 181 tttgcttatctctagtcttcttttccaagtctacagttccttaatgtcagcctcaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcttatctctagtcttcttttccaagtctacagttccttaatgtcagcctcaattat 440

                 
Query: 241 gattta 246
           ||||||
Sbjct: 441 gattta 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)