BAC Information

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BAC

Clone NameMSMg01-448H19
Chromosome6 (Build37)6 (Build37)
Map Location 85,533,888 - 85,534,37185,864,170 - 85,864,554
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneAlms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448H19.T7 (MSMg01no448_h19.b1)MSMg01-448H19.TJ (MSMg01no448_h19.g1)
ACCAG536689AG536690
length750744
length of high quality
(start - end)
484 (51 - 534)385 (81 - 465)
definitionCHROMAT_FILE: MSMg01no448_h19.b1 PHD_FILE: MSMg01no448_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:47 2005CHROMAT_FILE: MSMg01no448_h19.g1 PHD_FILE: MSMg01no448_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:47 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,533,888 - 85,534,371)(85,864,170 - 85,864,554)
sequence
ATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGATCCGCG
GAATTCATAGACCTGTGACCCAAATGAGTAAAAGCAGTTGTGAATTTTCA
ATGTAAAACTTTGAATTTTGTCACATTTCTGTCTCTGGGACTCTGGATTG
ATAGAATTAGTTTTCAACAAGGATGTAACAAGAGCTCATATGAACGGGAA
GTTGATGCTTGATGGTTTACTTTTCATGCACTTGGCTTAATAAGTCAGAA
AGGGGCTTTCTAATTGGTCAAGCAAATGGATTCGGATTACCAAGGGAACT
AGAGAGAGTATGACAATGTGGAGTATTTAGAGACTATATCTGGAGAGAGA
TTGCTTATGGGTTAAGAGTTTTTGTTTTTGCAGTGGTCCTGGGCCCCAGA
TGGTGGCTCATACTACCTGTAACTCCAGTTCTAAGGGATTCCATAGCCTC
CTTTAGCCTCCTCAGGTACCAGGCACACACGTGGTGCACATACATAGATG
CAGAGAAACATTCCTACACATTAATAAATGAATCTGAAAAAAGTGCTTTA
CTAGGAATATATCTGGAACATAGGTGATTTTCTGGGGGCGTTCTGTTAAA
ATGACCTGTCTAGCAATATCATGTAATGGAACGAGAAATTCACCTTAAGT
AGGATAAATTCTTTTCGAAATAGTTTGCGGCCTCCCAATGGACCCTACAT
CTGCTGCCCCCTCTTGTAACTCGAATTTAATATTCTATTGGGGGTTGGCN

TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGCACAAAAAGATGTAC
ATCAGAACATACCATATGTAGCAGGAGCAGCTGTGTCTTGGAGTGAGAAT
TTCTGAAATATGCTTTGTTCTGAAACAGATATAGACAATAAAGGTCTGAA
CCAAAGTTAGAAGACAGTGTCAGGTAGCCACATATAAAACCATTTCTCTG
TAACTTCTCAGCTTTCCTTTTGGAAAGTCCACCACAGTGAGTCCAGTCTC
ACTCACCAGGGCTAGACTGCCCTGCTCTTATAGCCTTTCTGTTTCAGCTT
CCCCAGTGCTGGAATTTCACACAAGCAGTGTGACTTGGTTCTAATTCTGA
CTCCTTTCCACATCTCTGAAGATACTATTGTTTGGTTGTGGTGGTTTAAT
TTTATCTCTCAGNCCTGTGATGGGATCTGTCCCAACCGATCTGATTCTGT
GTTGAAGGCGTGAATGAGTGACACTGCCCAGGATTTAATGCCAAAAACCC
CTGAGCCCACTCGTCCATTTCTTTTTCTACATTTGGTTACCCCGTGGGGG
AGGCCCTGCTCCCCCTCTAATCCTCTTTGTGCCGTCCCCTCTATTTGTTT
TCTCTTCCCTGTCCGCCGCCCAAACCCTATACTTTTTTTTCTCTTCTTTT
TTCTCTTGTCCCATACTCTCTTCTATTCCCCTTTTATTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_h19.b1 MSMg01no448_h19.b1 CHROMAT_FILE:
MSMg01no448_h19.b1 PHD_FILE: MSMg01no448_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:47 2005
         (484 letters)



>mm_chr6_85533688_85534571
          Length = 884

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcatagacctgtgacccaaatgagtaaaagcagttgtgaattttcaatgtaaaact 60
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcatagacctgggaaccaaatgagtaaaagcagttgtgaattttcaatgtaaaact 260

                                                                       
Query: 61  ttgaattttgtcacatttctgtctctgggactctggattgatagaattagttttcaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaattttgtcacatttctgtctctgggactctggattgatagaattagttttcaacaa 320

                                                                       
Query: 121 ggatgtaacaagagctcatatgaacgggaagttgatgcttgatggtttacttttcatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatgtaacaagagctcatatgaacgggaagttgatgcttgatggtttacttttcatgca 380

                                                                       
Query: 181 cttggcttaataagtcagaaaggggctttctaattggtcaagcaaatggattcggattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggcttaataagtcagaaaggggctttctaattggtcaagcaaatggattcggattac 440

                                                                       
Query: 241 caagggaactagagagagtatgacaatgtggagtatttagagactatatctggagagaga 300
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 441 caagggaactagagagagtatgacaatgtggagtaaggagagactatatctggagagaga 500

                                                                       
Query: 301 ttgcttatgggttaagagtttttgtttttgcagtggtcctgggccccagatggtggctca 360
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcttatgggttaagagtacttgtttttgcagtggtcctgggccccagatggtggctca 560

                                                                       
Query: 361 tactacctgtaactccagttctaagggattccatagcctcctttagcctcctcaggtacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactacctgtaactccagttctaagggattccatagcctcctttagcctcctcaggtacc 620

                                                                       
Query: 421 aggcacacacgtggtgcacatacatagatgcagagaaacattcctacacattaataaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcacacacgtggtgcacatacatagatgcagagaaacattcctacacattaataaatg 680

               
Query: 481 aatc 484
           ||||
Sbjct: 681 aatc 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no448_h19.g1 MSMg01no448_h19.g1 CHROMAT_FILE:
MSMg01no448_h19.g1 PHD_FILE: MSMg01no448_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:47 2005
         (385 letters)



>mm_chr6_85863973_85864757
          Length = 785

 Score =  731 bits (378), Expect = 0.0
 Identities = 383/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggcacaaaaagatgtacatcagaacataccatatgtagcaggagcagctgtgtcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tctggcacaaaaagatgtacatcagaacataccatatgtagcaggagcagctgtgtcttg 523

                                                                       
Query: 61  gagtgagaatttctgaaatatgctttgttctgaaacagatatagacaataaaggtctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gagtgagaatttctgaaatatgctttgttctgaaacagatatagacaataaaggtctgaa 463

                                                                       
Query: 121 ccaaagttagaagacagtgtcaggtagccacatataaaaccatttctctgtaacttctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccaaagttagaagacagtgtcaggtagccacatataaaaccatttctctgtaacttctca 403

                                                                       
Query: 181 gctttccttttggaaagtccaccacagtgagtccagtctcactcaccagggctagactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gctttccttttggaaagtccaccacagtgagtccagtctcactcaccagggctagactgc 343

                                                                       
Query: 241 cctgctcttatagcctttctgtttcagcttccccagtgctggaatttcacacaagcagtg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cctgcacttatagcctttctgtttcagcttccccagtgctggaatttcacacaagcagtg 283

                                                                       
Query: 301 tgacttggttctaattctgactcctttccacatctctgaagatactattgtttggttgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgacttggttctaattctgactcctttccacatctctgaagatactattgtttggttgtg 223

                                    
Query: 361 gtggtttaattttatctctcagncc 385
           |||||||||||||||||||||| ||
Sbjct: 222 gtggtttaattttatctctcagccc 198


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)