BAC Information

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BAC

Clone NameMSMg01-450C07
Chromosome6 (Build37)
Map Location 112,557,039 - 112,557,302
singlet/doubletsinglet
Overlap geneEG434077
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076
Downstream geneRad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450C07.T7 (MSMg01no450_c07.b1)MSMg01-450C07.TJ (MSMg01no450_c07.g1)
ACCAG537943AG537944
length748751
length of high quality
(start - end)
70 (173 - 242)243 (81 - 323)
definitionCHROMAT_FILE: MSMg01no450_c07.b1 PHD_FILE: MSMg01no450_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:57 2005CHROMAT_FILE: MSMg01no450_c07.g1 PHD_FILE: MSMg01no450_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCATGAAAAATTGCGGCCGCTAAAAGAANCACAATCGGATCCTGGGG
NGNGGAANNCNNCCTTGCCGCACCGCGGAGGGGAAAAGAAAGCCCCCAGA
ACCANCCACAGCCNNGATTTTCCCCTCTCCCACCTCTGGTCCAGGGTGGG
CAGGAGGTTAGACATCACCAACCCAGCACCCAACTGCAGCCAGCATCTTC
CTGTGACCCTGCTCAGACCTTCCTGCAGCTAAAAGCACTGAAGTCAAATC
TTTTTCCCCTACCCTCCGCCTCTCTGACACCTCAGTCCAGAGGCTCAAGA
CCACGACCCNCCAGATTTTTTTTTTTGCCCGGGCAACCGCAGGCAGCCCA
CCAAAGCACTTCCCCCCCCCCCAACNAAGGCGGGGAGCACNCACCCCACA
GACAACAACACACCCCCCCCCGNAAGGAACAGCAGGGCAGAAAAGGCCCG
AGCCCACGCCACCCCGAAGGCAGACACCCCACNACCCGAACCGCACCCAG
CACGGCCCCAGCGCCCCGAAGGCAACACGGCGGAAAGGAGCGACCCACAG
AAGAGAGAAGAACGAGAAGACCGGAAGCCACCAACCCCGCACCAGGCACG
AACCCCCCCAAGCGAGGCCCCGCGCAGACGAGGAACCAAACCAGCAACGC
GATATTCCCCGACACAACAAAAGCCAAAAAAGCGACCCAACAACACCCCC
CAGAACCGCCACACACACAGACAACCTAGGCCACCCCGTCAATGTCCC
GATGCGATAGTGGGGTGAGGCCTGGCGGGCGCCTGTTTTCAAAATGGGGG
GNGAXXXXXXXXXXXXXXXXXXXXXXXXCACGTAACTTCCATATTCCTGA
AGACACGATTTCCTAGTACAGGGAAAGAGCTTGGTCTGAGGTTTTCTGAT
TTTAACTGTGATTCTGTTTCCCCACCAGAAGACTAAGCTAGACTCGGATC
TGACAATGTGGTGATGAAAGGTGAACCCATCTCTTTTCAAAACATCCTTC
TGGTATCATACAAGAAGAATAAACATTTCTGTGAAAGTAGAAAAACATGA
ACATGAAACTTACTATCTAGAGTTTTTTATAAGGTCCAATCCCCCACATA
TACTCATTAGAGGTATAAAAAACAACCCTTCCAAATGTTGTCCTGATTAA
AAAAGTAGAGCCCAGAAGCAAAATCATGAAATGTCTCTATGTTAAAAATC
AAGAATAAATAAATGAATGGTCAAGTTGCTCTGAAGCTAACAATTATCCT
GTGGTCTTCAGAGAACTCAGAAACGGTGAACTGACGCCCCACAGTTTCTC
TTGCGTACCACTATAGATTGCTGCGATCGACCGACATTCTTATGAGACCT
AGTATTCCGTGTCCTTCTGAGGTCTGATACCCGGCTCCCTTACTGGCTCT
ACGTCCTCTTTCCGTTTTGCCCTCGACTTCTTGACTTCTCTTTCCCCTCT
TTCTTATCCTTTGTGCATCACCTTCTCTTTTTTCCTTTTTTCCGTCCTAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_c07.g1 MSMg01no450_c07.g1 CHROMAT_FILE:
MSMg01no450_c07.g1 PHD_FILE: MSMg01no450_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:58 2005
         (243 letters)



>mm_chr6_112556804_112557446
          Length = 643

 Score =  379 bits (196), Expect = e-110
 Identities = 237/264 (89%), Gaps = 21/264 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtaacttccatattcctgaagacacgatttccta---------------------gtac 39
           |||||||||||||||||||||||||||||||||||                     ||||
Sbjct: 499 cgtaacttccatattcctgaagacacgatttcctagtcatcatggactctggttatgtac 440

                                                                       
Query: 40  agggaaagagcttggtctgaggttttctgattttaactgtgattctgtttccccaccaga 99
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 439 agggaaagagcttggtctgaggttttctgattttaactgcgattctgtttccccaccaga 380

                                                                       
Query: 100 agactaagctagactcggatctgacaatgtggtgatgaaaggtgaacccatctcttttca 159
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 agattaagctagactcggatctgacaatgtggtgatgaaagatgaacccatctcttttca 320

                                                                       
Query: 160 aaacatccttctggtatcatacaagaagaataaacatttctgtgaaagtagaaaaacatg 219
           |||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 319 aaacattcttctggtatcaaacaagaagaacaaacatttctgtgaaagtagaaaaacatg 260

                                   
Query: 220 aacatgaaacttactatctagagt 243
           ||||||||||||||||||||||||
Sbjct: 259 aacatgaaacttactatctagagt 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)