BAC Information

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BAC

Clone NameMSMg01-450F11
Chromosome6 (Build37)
Map Location 138,465,233 - 138,465,540
singlet/doubletsinglet
Overlap geneLmo3
Upstream geneEps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneIgbp1b, EG668196, EG632971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F11.T7 (MSMg01no450_f11.b1)MSMg01-450F11.TJ (MSMg01no450_f11.g1)
ACCAG538094AG538095
length740757
length of high quality
(start - end)
309 (49 - 357)308 (332 - 639)
definitionCHROMAT_FILE: MSMg01no450_f11.b1 PHD_FILE: MSMg01no450_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:14 2005CHROMAT_FILE: MSMg01no450_f11.g1 PHD_FILE: MSMg01no450_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATTTTGTCAAATATTGAAACAGCTACACCAGCTCTAATTTT
AGGTCCATTTGTTTAGATAAGCTTTTTCCAATCCTTTACTCGGAGGTACT
GTCTATACTGGATATTCAAGTGTATTTCATGTATGCAGTAGAAGAATAGA
TCCTGTTTTCACACCCATTCTGATATTTTGTGTCTTTTTATTAGGGAACT
GAGACCACTGATTCTGAGCTATATCAATGACCAATGATCGCTAATTCATA
GTATTTTGTTGTCATTGTTTTTAGTAGTACTGTGTTTGTATGGTGGTGGT
GGTGTGTTTTTTTTTCTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTNTTTNTTTCCTTTTTTTTNTCTTTTTTTTTTTTTT
TTTTTCCNCTTCTTCTTTCTCCCCCTTTTCCTCTCTCTTTTTTTTCTTTT
CCTCTTTTTCCTCCTTCCCCCCCCCTTCCCCCTTCTTTTTTTCCCCTTTC
TCTTCCCNTCCCTTTTTTCCCCCTTCCTTCCTCTTTTCTCTTCCCTCCCT
CTTCCCCTTTTTTTTTTTCTTTCTCTTTCTCCCCTTTTCC
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGAGCCCAAAGAATACAA
TATGGTAGAGAAAAGGAACCTTAAATGAGTCCTGAAATGGTGGTTTGTCT
GTCTTCCTTGAGGGCAGAAGAGAGTGGCTGGGTAAATAGTTCAATGAAAC
ATGGTTGCTCCCTAAGCCCTCAGCCAGTCTTTACCCTTTATTATCTTGGC
CCTGCTCTACTTTCCAGAGAGCAGGTAACTAGTGCAGTCAATTCCCCCGA
CAGTTCTAAAGAATCTGTCGGCCTCTTTTTCTCCCTGTAGTCTAGTCAAT
GTTTTGCGTGGTATGCCTCGTTTCCAGTAACCCAGTTAAATTAAAGGTTT
GTTGAGGGCTAGAAAATCTACATAATAACCCTACACACTTATGTTGGTTC
CTTCCTTATGCCTGAAGAATAATCATGAACTTTGCAAAAGAGCCAATCAC
CAATCGCACAAATAACTTTCTCTACTTTTTTCCCTGTAATGTTCCCATGT
CCCTGTGAGTAATAAAATTTCTTAGTTACTATAATTTATGAAATTGTTTA
ATTGCCAGTGTCAGTAGTTATTTGTAACTACTACTGTAAAAATCTGTTTG
TGTTGGAATGTGGATAAAAATGTCTACTCTGCATAACTGGGTGTCAAAGA
TGTGAGGGTGAAAATATCTGTTTGTTCAGTGTACATGAAATTATGCAGAA
TGTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f11.g1 MSMg01no450_f11.g1 CHROMAT_FILE:
MSMg01no450_f11.g1 PHD_FILE: MSMg01no450_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:14 2005
         (308 letters)



>mm_chr6_138465033_138465740
          Length = 708

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgtagtctagtcaatgttttgcgtggtatgcctcgtttccagtaacccagttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgtagtctagtcaatgttttgcgtggtatgcctcgtttccagtaacccagttaaat 260

                                                                       
Query: 61  taaaggtttgttgagggctagaaaatctacataataaccctacacacttatgttggttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaggtttgttgagggctagaaaatctacataataaccctacacacttatgttggttcc 320

                                                                       
Query: 121 ttccttatgcctgaagaataatcatgaactttgcaaaagagccaatcaccaatcgcacaa 180
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 321 ttccttatgcctgaagaataatcatgaactttgcaaaagggccaatcaccaatcgcacga 380

                                                                       
Query: 181 ataactttctctacttttttccctgtaatgttcccatgtccctgtgagtaataaaatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataactttctctacttttttccctgtaatgttcccatgtccctgtgagtaataaaatttc 440

                                                                       
Query: 241 ttagttactataatttatgaaattgtttaattgccagtgtcagtagttatttgtaactac 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttagttactataatttatgaaattgtttaattgccagggtcagtagttatttgtaactac 500

                   
Query: 301 tactgtaa 308
           ||||||||
Sbjct: 501 tactgtaa 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)