BAC Information

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BAC

Clone NameMSMg01-450H07
Chromosome6 (Build37)
Map Location 118,618,007 - 118,800,616
singlet/doubletdoublet
Overlap geneCacna1c
Upstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450H07.T7 (MSMg01no450_h07.b1)MSMg01-450H07.TJ (MSMg01no450_h07.g1)
ACCAG538182AG538183
length766760
length of high quality
(start - end)		238 (82 - 319)482 (81 - 562)
definitionCHROMAT_FILE: MSMg01no450_h07.b1 PHD_FILE: MSMg01no450_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:23 2005CHROMAT_FILE: MSMg01no450_h07.g1 PHD_FILE: MSMg01no450_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,800,382 - 118,800,616)(118,618,007 - 118,618,488)
sequence
CAACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAGGAGGCGC
GGAATTCCAGTAATGCGAACCAGGGTCTTGNGAGTGGCAAGAGCTCTCTG
ACCAGGACCAAGAGGGCTGGCCTTTCTTCATGCAGCTTCATTCTGGAGGC
TCCTTACAGTGGTAATACACTGCTGGGAGACCAGCCCTCGGAGAGGCCAG
CTTGGCCAGCTTGCTGAAGCTTTTCAACTCAGTGGCCGAACAAACAATGG
GTCTCAAGCCTTCTGCATTTTATGCTCAGAACTGGCCTGTGGCTTTAGGA
TACATTTATGATCTGGTTTCCTGCTTTTAATTAATGATAACAACATGAAT
CCATTTTAAGATGAAGGAATCTGGTCGGTCTGTGCAGACCTTTGGTGAAG
AAAGAGCCACACTTGTCCTGGCTGTTCAGTGCCTTATAGTGTCCCTTGTG
GTAAAGAACCATGGGTTTCTTCCCCCCAGCTTGTCAACCCCTCATCCTAC
AAGTGCTCCCTGAGCTGCTCCATGTTCGAAGCCCATTTCCACACTGCTTA
GTTGTTCCCCTTATTCTCAAACATTCGCCCTCCCCCATCTGCTTTATCTC
TTTTGCTTTTCCATTCTGTGTACCTGTTTCCCCTTTCTATAACCCGTTCA
TTGTTTTCCCCCTTTTTTTTCCTGATCGATTTTTGCCTGCCAACCTGTCC
CGTCTTGTTTACTTACCTTCCTTCAAATCTTTCTTATTTTTTATTCATTA
TTCCCCTCATATGACC

NNTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCCCATTGCTCTCACCT
ACCAGCCGAACCATTGAGGACAGAGTTCTTAATATTTTGTGCCCTCATTT
TTCATCTGGAAGATGGGGCAGTAATTCAGATTGTTTCCTGGGTAAAGGAG
GATTTATGGAGATTCAAGAGGAGGGTCTGGCCACATACTGTGAGAGCGCT
TAGTAAAATGGTATATCTGCTATCCTGCCCCAACATCACTGCACTACATA
CCAAATAAACAATGGTGAAACTCCAGGCCTGGAGGTTGGAGCTGGTAGGT
ATGTGTAAGGAATTCTGGACTATTTTGAAGCACAACCCCCAGGGCATGGC
CCACTATGGTATATACACTCTTCCATGGGTCAGGACACGCTCAGGCTTCC
AAGAAACAGTGGTATCCAAAGAAGCATGGAATGCCAAGGTCAGAGCAGAA
CATCTGGGGGCCTCAGTCTGTGGTTTCTTTCTGGTAGGGAGTGGTGGCAG
GCACTCCTATAAGCCCTTCAGGAAGGCAGCTAGATGGTTTCTGTGGGTCC
CATCCAGCAGAATCACTAACCACACTCATTGGTGGAACGGCCCCTGCAGG
GTTCTCCGACCTGACGTGCTAATTAAAATTTCTCCCCTAGCCTTTGTCAT
AAGAATCCCTACTTTCCTGGCATCCACACAAAAGGGGTGTGGGCCTGACA
TGTCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_h07.b1 MSMg01no450_h07.b1 CHROMAT_FILE:
MSMg01no450_h07.b1 PHD_FILE: MSMg01no450_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:23 2005
         (238 letters)



>mm_chr6_118800182_118800819
          Length = 638

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtggcaagagctctctgaccaggaccaagagggctggcctttcttcatgcagcttcat 60
           |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 435 gagtgggaagagctctctgaccaggaccaagagggctggggtttcttcatgcagcttcat 376

                                                                       
Query: 61  tctggaggctccttacagtggtaatacactgctgggagaccagccctcggagaggccagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 375 tctggaggctccttacagtggtaatacactgctgggagaccagccctcagagaggccagc 316

                                                                       
Query: 121 ttggccagcttgctgaagcttttcaactcagtggccgaacaaacaatgggtctcaagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttggccagcttgctgaagcttttcaactcagtggccgaacaaacaatgggtctcaagcct 256

                                                                  
Query: 181 tctgcattttatgctcagaactggcctgtggctttaggatacatttatgatctgg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tctgcattttatgctcagaactggcctgtggctttaggatacatttatgatctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no450_h07.g1 MSMg01no450_h07.g1 CHROMAT_FILE:
MSMg01no450_h07.g1 PHD_FILE: MSMg01no450_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:23 2005
         (482 letters)



>mm_chr6_118617807_118618688
          Length = 882

 Score =  932 bits (482), Expect = 0.0
 Identities = 482/482 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccccattgctctcacctaccagccgaaccattgaggacagagttcttaatattttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccccattgctctcacctaccagccgaaccattgaggacagagttcttaatattttgt 260

                                                                       
Query: 61  gccctcatttttcatctggaagatggggcagtaattcagattgtttcctgggtaaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctcatttttcatctggaagatggggcagtaattcagattgtttcctgggtaaaggag 320

                                                                       
Query: 121 gatttatggagattcaagaggagggtctggccacatactgtgagagcgcttagtaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttatggagattcaagaggagggtctggccacatactgtgagagcgcttagtaaaatg 380

                                                                       
Query: 181 gtatatctgctatcctgccccaacatcactgcactacataccaaataaacaatggtgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatatctgctatcctgccccaacatcactgcactacataccaaataaacaatggtgaaa 440

                                                                       
Query: 241 ctccaggcctggaggttggagctggtaggtatgtgtaaggaattctggactattttgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccaggcctggaggttggagctggtaggtatgtgtaaggaattctggactattttgaag 500

                                                                       
Query: 301 cacaacccccagggcatggcccactatggtatatacactcttccatgggtcaggacacgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaacccccagggcatggcccactatggtatatacactcttccatgggtcaggacacgc 560

                                                                       
Query: 361 tcaggcttccaagaaacagtggtatccaaagaagcatggaatgccaaggtcagagcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaggcttccaagaaacagtggtatccaaagaagcatggaatgccaaggtcagagcagaa 620

                                                                       
Query: 421 catctgggggcctcagtctgtggtttctttctggtagggagtggtggcaggcactcctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catctgggggcctcagtctgtggtttctttctggtagggagtggtggcaggcactcctat 680

             
Query: 481 aa 482
           ||
Sbjct: 681 aa 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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