NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAATGTATGTTCTTACTTTAATAAAAACCAGATTAACTGATG
TTTTGTGTGTGTTTTTTTTGAGACTTTAAATGGTAATTTCTACTTTGTAT
GCCTTTAAAAGATGATTCTCTTCACAGCCTTCTACAGTATATAAGTGATC
CTATAATTCCATAGATGGAAAACTCCATTAAAATAATCATTTTTTAAAAA
TTCAAGAGTTGAGAGAAGAACATAATGATTAAAATATTAACAAATTATTT
AGGATATACTGGGTGACTCATTAAATTTAGCTTCACTTTACTATGTATTC
ATTCTTGTCTCTGTAGGTACTTTGCTATACCTTCCTAGACTACATGTCCT
GGACAAAGATTTGTTCTTTAAAGGATCATTGAGAGAGCAAAATAGTTCTT
GTATTGTGCTTAATAATTTGTCTAAAACTTGAGAAAATCTGGCTTTCAAA
TAAGAATTAATAACATCATCAACTTTTCTGATAGAGAATTCTACTGAGGA
GCACATCACTTTCAATATTATCATTAATAATTAAATAAAATATACTTAAA
AACTGATGTTTTAATTCAAGACATTCTTCAATTAAAAATCAGGAGCCTTA
GGTTCACTGTTCATTTTTAAATAATGAATATTGTGAACTTTAAAAAGAAC
TTTTACTTTTCTTGACATAGATTTCTTCATTATTAAAATAAAGTTAGCTT
ATGACTTAAAAGAATCAAGGGTCTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAACTGGGGAATATTGAAGAA
CCAAGAAGCACCTAAAGAAATGTTCAACATTGTTAGTCATCAGGGAAATG
CAAATAAAACAACCATTAGTTTCTACCTCACACCAACCAGAATGGATAAG
ACCAAAAATGCAGGTGACAGCAGATGCTAGTGAGGTTGAGGAGAAAGAGG
AACACTCCTCCATTGTTGATGTCATTTCAAGCTGGTAAATCCAGTTTGGA
AATCAATCTGGTGGTTTCTGAGAAGATTGAAAATAGTTCTATGTGAAGAC
CCAACTATATCACTCCTGGGCATATACCCAAAAGGTGTTTCAGCATATAA
TAAGGACACATGAATAGAGAAAATTTGGGATATTTACACAATGGAGTACT
ACTCAGCTATTAAAAACAATGACTTCATGTACTTCACAGGCAAATGGATC
AAACTAGAAAATATCATCCTGGGCAAGGTAACCTAGACACAAAACAACAC
ACACAGTATATACTCACACATAAGTGGATATTATCCTTAAAGCTCACATG
CCCATGGTGCAACCCTCAGACCATATAGAGCTTAGGAGGAAGGAAGCTCA
GCATGTGGATGCTTCAGTCATGCATTGACTTGACAGGGGAAGAGAATGAA
TTTGGGAAGTAGAGGGAGTATAGGACCTGGGAGAGAGGAAGTGGAGGAAA
TAAGGGGACATTATCT

Query= MSMg01no451_n12.b1 MSMg01no451_n12.b1 CHROMAT_FILE:
MSMg01no451_n12.b1 PHD_FILE: MSMg01no451_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:14 2005
         (597 letters)



>mm_chr6_20003784_20004782
          Length = 999

 Score = 1081 bits (559), Expect = 0.0
 Identities = 586/595 (98%), Gaps = 2/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatgtatgttcttactttaataaaaaccagattaactgatgttttgtgtg-tg 63
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | 
Sbjct: 205 gaattctaatggatgttcttactttaatagaaaccagattaactgatgttttgtgtggtt 264

                                                                       
Query: 64  ttttttttgagactttaaatggtaatttctactttgtatgcctttaaaagatgattctct 123
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 ttttttttgagactttaaatggtaatttctactttgtattcctttaaaagatgattctct 324

                                                                       
Query: 124 tcacagccttctacagtatataagtgatcctataattccatagatggaaaactccattaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcacagccttctacagtatataagtgatcctataattccatagatggaaaactccattaa 384

                                                                       
Query: 184 aataatcatttttt-aaaaattcaagagttgagagaagaacataatgattaaaatattaa 242
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 aataatcatttttttaaaaattcaagagttgagagaataacataatgattaaaatattaa 444

                                                                       
Query: 243 caaattatttaggatatactgggtgactcattaaatttagcttcactttactatgtattc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaattatttaggatatactgggtgactcattaaatttagcttcactttactatgtattc 504

                                                                       
Query: 303 attcttgtctctgtaggtactttgctataccttcctagactacatgtcctggacaaagat 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 attcttgtctctgtaggtactttgctataccttcctagactacatgtcctggaccaagat 564

                                                                       
Query: 363 ttgttctttaaaggatcattgagagagcaaaatagttcttgtattgtgcttaataatttg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgttctttaaaggatcattgagagagcaaaatagttcttgtattgtgcttaataatttg 624

                                                                       
Query: 423 tctaaaacttgagaaaatctggctttcaaataagaattaataacatcatcaacttttctg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctaaaacttgagaaaatctggctttcaaataagaattaataacatcatcaacttttctg 684

                                                                       
Query: 483 atagagaattctactgaggagcacatcactttcaatattatcattaataattaaataaaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atagagaattctactgaggagcacatcactttcaatattatcattaataattaaataaaa 744

                                                                  
Query: 543 tatacttaaaaactgatgttttaattcaagacattcttcaattaaaaatcaggag 597
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatactttaaaactgatgttttaattcaagacattcttcaattaaaaatcaggag 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 999
Length adjustment: 10
Effective length of query: 587
Effective length of database: 989
Effective search space:   580543
Effective search space used:   580543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)