BAC Information

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BAC

Clone NameMSMg01-452C02
Chromosome6 (Build37)
Map Location 128,336,623 - 128,337,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1
Downstream geneNrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452C02.T7 (MSMg01no452_c02.b1)MSMg01-452C02.TJ (MSMg01no452_c02.g1)
ACCAG539456AG539457
length758759
length of high quality
(start - end)
631 (47 - 677)537 (77 - 613)
definitionCHROMAT_FILE: MSMg01no452_c02.b1 PHD_FILE: MSMg01no452_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:36 2005CHROMAT_FILE: MSMg01no452_c02.g1 PHD_FILE: MSMg01no452_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCAGGAACTCCCAGTAGGGGGCGCGCTGTGCCCTAGCTAGGT
GAAAGTGAGACTCAAAGATTTGTTGGGCCAAAGTTTTTACTTTGAAGATT
ACCAGCTAGAAGCAGCTGATCATAATCATGTTCTGCTTTGAAGTGCGTGC
TTTACCCTCCACTAGAATTGATATTTTGTTTTTATCTTTTCATTTTCGTG
ATTGGAAGGTTTTTTGTGGTTACTGGTATTGTAGGTTGGCAGAGTGCTGG
CTCCCCATCAGTGAGGTCCTAGATTCAGTCCCAGCTCTGAAGAAAAACAG
ATGTACTTGAAAACTTGTTTTTGGACCTCGATATTGTTTATCTGGATATG
TTTAAATATATGCTATATAATGTAGTTGGTATGGAAGAATTATTTCAAAG
AGAGAGTAAGTCAGTTCTATCTTTTTGAACGTGCAAAGAAACCTAATAAC
CTATTTCACTTTCGCCTTATTCTAACTTCTCCTTAAACATACATGTCCTA
GTTTCCTTTCTGTTGCTGTGATAAAAACACTCTGACCAACATCAGCCTAG
GGAAGAATAGGTGTGTTTAGCTTATATGTCTAGATCACAACCATCTTTGA
ATGAAGTCAGGGCATGAAGGAACCTGGAGGGAAAGCCCAGGGAGGAAAGA
TGTTCCAGCCATGCTCATCTAGCTTCCTTGTTCAGCCCAGGGATGTTGCC
ACCCACAA
TCCATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCACATTAAACAATAACCCCA
GCCCCTCCCACAAACCCTGGCACTTCTCTACTTTTTCTGTGAATTTGCCT
ATCCCAGGCCTCATCTACTATACAGTCTTTTGTGCTTAACATAGTGGTTT
CCAGTTGTCTCTTCACTGTGGCGTTTATCAGTACCCTGCTCCTTGTTATG
AGTGAATAATAGGTACTTTAGTCTGTGGACGATGGCAGAGAGTCATTTAG
AAGGCCTACGCTATGCCAGTGGTTTCCATTGTAGAAAACCAACCCAAATT
CCAGAGGGGAGAGGTTACTTTCACACAGGGCTCACAGCTGCTGAGTGGTT
GGTTGAGCCAGTGCTAGCTAAGCTCTGTGGTGTTTCAAATGCCAAGTGCC
TGCGGAGCTTTAGAGGGGCTTAGAGAGATGGCTCTGCGGTTAAGTGTGCT
TGCTGTTCTTCCAGAAGACCCCAGTTCAGTTCTCAGCACCTGTCCGTATC
AGGCAGTCCCCGACTGCCTGTAACCCCAGCCCCAGAGGATCAGATGCTCT
CTTGTGGGCTCTGGGGCACAGATGCGCTTAGATGCATTTAGAATGCACGT
GCACAAAGCCACACACATAAACACATAAGGGAAAGTAAAATATTTTGAAC
AAAAGAGAAGTGGAGTCAGATTTGTGGGCCAACAGGCAAAAGGGCAACTT
TAACATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_c02.g1 MSMg01no452_c02.g1 CHROMAT_FILE:
MSMg01no452_c02.g1 PHD_FILE: MSMg01no452_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:36 2005
         (537 letters)



>mm_chr6_128336396_128337332
          Length = 937

 Score =  961 bits (497), Expect = 0.0
 Identities = 531/547 (97%), Gaps = 10/547 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcacattaaacaataacccc-agcccctcccacaaaccctggcacttctctactttt 59
           |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||
Sbjct: 774 tgtgcacattaaacaataacccctggcccctcccacaaaccctggcgcttctctactttt 715

                                                                       
Query: 60  tctgtgaatttgcctatcccaggcctcatctactatacagtcttttgtgcttaacatagt 119
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 714 tctgtgaatttgcctatcccaggcctcatctactatacagtcttttgtacttaacatagt 655

                                                                       
Query: 120 ggtttccagttgtctcttcactgtggcgtttatcagtaccctgctccttgttatgagtga 179
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 654 ggtttccagttgtctcttcactgtggtgtttatcagtaccctgctccttgttatgagtga 595

                                                                       
Query: 180 ataataggtactttagtctgtggacgatggcagagagtcatttagaaggcctacgctatg 239
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 594 ataataggtactttagtctgtggacgatggcggagagtcatttagaaggcctacgctatg 535

                                                                       
Query: 240 ccagtggtttccattgtagaaaaccaacccaaattccagaggggagaggttactttcaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccagtggtttccattgtagaaaaccaacccaaattccagaggggagaggttactttcaca 475

                                                                       
Query: 300 cagggctcacagctgctgagtggttggttgagccagtgctagctaagctctgtggtgttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cagggctcacagctgctgagtggttggttgagccagtgctagctaagctctgtggtgttt 415

                                                                       
Query: 360 caaatgccaagtgcctgcggagctttagaggggcttagagagatggctctgcggttaa-- 417
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 414 caaatgccgagtgcctgcggagctttagaggggcttagagagatggctctgcggttaacc 355

                                                                       
Query: 418 --g-----tgtgcttgctgttcttccagaagaccccagttcagttctcagcacctgtccg 470
             |     ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gggttaactgtgcttgctgttcttccagaagaccccagttcagttctcagcacctgtccg 295

                                                                       
Query: 471 tatcaggcagtccccgactgcctgtaaccccagccccagaggatcagatgctctcttgtg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tatcaggcagtccccgactgcctgtaaccccagccccagaggatcagatgctctcttgtg 235

                  
Query: 531 ggctctg 537
           |||||||
Sbjct: 234 ggctctg 228


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)