Query= MSMg01no452_k19.b1 MSMg01no452_k19.b1 CHROMAT_FILE:
MSMg01no452_k19.b1 PHD_FILE: MSMg01no452_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:18 2005
(677 letters)
>mm_chr6_22199241_22200314
Length = 1074
Score = 1168 bits (604), Expect = 0.0
Identities = 663/702 (94%), Gaps = 33/702 (4%)
Strand = Plus / Minus
Query: 5 gaattcactatg--tccggttaataacaatacagttaatggcacaggcatatatgccttg 62
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattcactacgcat--ggttaataacaatacagttaatggcacaggcatatatgccttg 732
Query: 63 gcaaatgtttgaagtatttacctaggaatattagccaacacgtctttttcattctcttta 122
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 731 gcaaatgtttgaagtatttacctaggaatattagccaacaagtctttttcattctcttta 672
Query: 123 atccaaagtgagtatatttacatttttttttcttggcccactttctaaatttgctgttgt 182
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 671 atccaaagtgagtctatttaca--tttttttcttggcccactttctaaatttgctgttgt 614
Query: 183 gaagtatactttaagaagacgtagaggacaattggtttcctaaatgtgacagtctattat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaagtatactttaagaagacgtagaggacaattggtttcctaaatgtgacagtctattat 554
Query: 243 cgtgatagcattgttcaacatactaatgtcttatcatttgtcatgttttataataaagat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtgatagcattgttcaacatactaatgtcttatcatttgtcatgttttataataaagat 494
Query: 303 ttagcatagcaaggatctagcttagaatatgattcacacaggtatggagttccaacttta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttagcatagcaaggatctagcttagaatatgattcacacaggtatggagttccaacttta 434
Query: 363 tttgcaggtcgaaattacagtcttttgatagtaattgttatgtcaatctgctagctgtgg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttgcaggtcgaaattacagtcttttgatagtaattgttatgtcaatctgctagctgtgg 374
Query: 423 tacttaggataatttgagagtggaaaccaacgtgataggcaaataaaatctccagaggcg 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 373 tacttaggataatttgagagtggaaaccaacgtgataggcaaataaaaactccagaggcg 314
Query: 483 atcagccgcctcatgcctcagtggagggagaaccgagatttttgtcccttgcagccaaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atcagccgcctcatgcctcagtggagggagaaccgagatttttgtcccttgcagccaaga 254
Query: 543 agtaacttttactgtcccatagtttttt---------------------------tgttt 575
|||||||||||||| ||||||||||||| |||||
Sbjct: 253 agtaacttttactgccccatagttttttgtttttttttgtttttgtttttgtttttgttt 194
Query: 576 ttaaacatgttgagatatctcttggtttgcaattacatgtttttatttctatgtaaataa 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttaaacatgttgagatatctcttggtttgcaattacatgtttttatttctatgtaaataa 134
Query: 636 aaatgtggtcatgagatattctagaatgtgtagagatgccag 677
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 133 aaatgtggtcatgagatattttagaatgtgtagagatgccag 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1074
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1064
Effective search space: 709688
Effective search space used: 709688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_k19.g1 MSMg01no452_k19.g1 CHROMAT_FILE:
MSMg01no452_k19.g1 PHD_FILE: MSMg01no452_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:18 2005
(442 letters)
>mm_chr6_22010987_22011828
Length = 842
Score = 731 bits (378), Expect = 0.0
Identities = 417/438 (95%), Gaps = 13/438 (2%)
Strand = Plus / Plus
Query: 5 actaggaataaaaatttcaatgaaccgataatttttctttaaatttaagacacatttcta 64
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 205 actaggaataaaaatttcaatgaaccggtaatttttctttaaatttaagatacatttcta 264
Query: 65 aaataaatagcatgtgattttttttctatctgtgtcatttcatagtacacttgtggttga 124
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct: 265 aaataaatagcatgtgattttttttccacctgtgtcatttcatagtacacttatggctga 324
Query: 125 ctgcggagaccttagctctttaattgtgctcttttaagctaaagcctggtttgctcagcc 184
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ctgcggagaccttagctcttt-------------taagctaaagcctggtttgctcagcc 371
Query: 185 tggcctcaaacactctgagtagccaatactatccttgaatttctgatttccttgcctcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggcctcaaacactctgagtagccaatactatccttgaatttctgatttccttgcctcta 431
Query: 245 atccccaagtgattggggttgtaggtgtgtgccaccacccctggcttgaaatccccttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atccccaagtgattggggttgtaggtgtgtgccaccacccctggcttgaaatccccttca 491
Query: 305 caccccacatctcctgcagggactgggacttgaacatgcttgaacatgggccttgttcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caccccacatctcctgcagggactgggacttgaacatgcttgaacatgggccttgttcat 551
Query: 365 gctaagaaagcactcgaccacttagctgtatctccagatacttcattttgaaataaagca 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gctaagaaagcacttgaccacttagctgtatctccagatacttcattttgaaataaagca 611
Query: 425 ataatgtggatctgtgga 442
|||||||| |||||||||
Sbjct: 612 ataatgtgtatctgtgga 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
