Query= MSMg01no453_g19.b1 MSMg01no453_g19.b1 CHROMAT_FILE:
MSMg01no453_g19.b1 PHD_FILE: MSMg01no453_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:17 2005
(676 letters)
>mm_chr6_4438257_4439332
Length = 1076
Score = 1247 bits (645), Expect = 0.0
Identities = 666/673 (98%), Gaps = 2/673 (0%)
Strand = Plus / Plus
Query: 5 gaattctcttc-acaatagcagcaatgccacatagctaagcagctggaaccctgcctgac 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcaacaatagcagcaatgccacatagctaagcagctggaaccctgcctgac 264
Query: 64 catagctccacagccctccccttccaaaaagaagccaacgtggctcaagaggctcctccc 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 catagctccacagccctccccttccaaaaagaggccaacgtggctcaagaggctcctccc 324
Query: 124 cgaggggaagctgttgctcagcctccatcctaggaccaattctttcatgcatagcaaaac 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 c-aggggaagctgttgctcagcctccatcctaggaccaattctttcatgcatagcaaaac 383
Query: 184 tttcataaaatcatgccctcctctccctcctacttcccactcctcattttcatggatccc 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttcatgaaatcatgccctcctctccctcctacttcccactcctcattttcatggatccc 443
Query: 244 ccaatttttctctgtgaatctcctcccacacacacaccctttttctcctgggcttcagca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccaatttttctctgtgaatctcctcccacacacacaccctttttctcctgggcttcagca 503
Query: 304 tccatcgtaactagttagctccactcacattatccactattttactcaaaattcgaggat 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 tccatcgtaactagttagctccactcacattatccactattttactcaaaatgcgaggat 563
Query: 364 tactctttgctttatcttcaagagaagtggagagagccagacaaaggaagaagagggaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tactctttgctttatcttcaagagaagtggagagagccagacaaaggaagaagagggaga 623
Query: 424 acaggagaggagatgaggggggagattagaatggggtgagggagagaacaggagctgaga 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 acaggagaggagatgaggggggagattagaatggggtaagggagagaacaggagctgaga 683
Query: 484 agagcgggagagggggagagaaggattcagacattctaaactctcttcctgagtgctatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agagcgggagagggggagagaaggattcagacattctaaactctcttcctgagtgctatt 743
Query: 544 taaagcagtttccaacctggagagaatgtaatgcacagttcctccatgtgtttagttaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaagcagtttccaacctggagagaatgtaatgcacagttcctccatgtgtttagttaag 803
Query: 604 gacctcatgagtcttgtggatttctccacaacctaagtggttattatgctgaccggaggg 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 gacctcatgagtcttgtggatttctccacaacctaagtggttattatgctgacccgaggg 863
Query: 664 tgtgccatttggt 676
|||||||||||||
Sbjct: 864 tgtgccatttggt 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_g19.g1 MSMg01no453_g19.g1 CHROMAT_FILE:
MSMg01no453_g19.g1 PHD_FILE: MSMg01no453_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:18 2005
(689 letters)
>mm_chr6_4602116_4603204
Length = 1089
Score = 1309 bits (677), Expect = 0.0
Identities = 686/689 (99%)
Strand = Plus / Minus
Query: 1 actgctgagagtccttacctggaattcagctaccctagggtcccagagggaaacatcgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 actgctgagagtccttacctggaattcagctaccctagggtcccagagggaaacatcgta 830
Query: 61 acatacgtggcaggagcgacctcttttggagaaacttagactctaacactctagaggtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 acatacgtggcaggagcgacctcttttggagaaacttagactctaacactctagaggtag 770
Query: 121 gccaagattctctttaggaagaaaaataatattgagtttgtgttctcatccagacagatg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 769 gccaagattctctttaggaagaaaaataatattgagtttgtgttctcacccagacagatg 710
Query: 181 gaccatttagtttccaaatttccgcttaatataatctagtcttaattaattttagtttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaccatttagtttccaaatttccgcttaatataatctagtcttaattaattttagtttgg 650
Query: 241 aaaaggttggaggaagcataagaaaatacagtggctattaagaaacaatccccctgcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaaaggttggaggaagcataagaaaatacagtggctattaagaaacaatccccctgcttg 590
Query: 301 ccagttcccagaaggatctacagaaagactgatttattatgctgtttgcctgactttctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ccagttcccagaaggatctacagaaagactgatttattatgctgtttgcctgactttctt 530
Query: 361 ccaagttaaattatttgtgcgatatacattaaggcatgggaatgaagtggccttctgtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ccaagttaaattatttgtgcgatatacattaaggcatgggaatgaagtggccttctgtac 470
Query: 421 agaattagcaaccaactagaatctggagacagcttggtatttctacaccataagagcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agaattagcaaccaactagaatctggagacagcttggtatttctacaccataagagcttt 410
Query: 481 ctatatgcccagggcattacatttctgtcaaatagttatggtctgtacatttccaggctg 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 409 ctatatgcccagggcattacatttctgtcaaatagttatggtctgtaaatttccaggctg 350
Query: 541 tatttttttctaattatgccttttggcatgtttaagttttgatttttcatctaatagaac 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gatttttttctaattatgccttttggcatgtttaagttttgatttttcatctaatagaac 290
Query: 601 ttggaattaagttttaaattttcatgtactggaatgtcgtgattctgtttttaacttttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttggaattaagttttaaattttcatgtactggaatgtcgtgattctgtttttaacttttg 230
Query: 661 attttccttcctgagctgtttctcctttg 689
|||||||||||||||||||||||||||||
Sbjct: 229 attttccttcctgagctgtttctcctttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
