TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTCTCTCCATTTGAGGAAACAAAGGCAACATTTACACAGATTTT
TTTTTGTTTTGTTTTTTAAATTTTATTTTATTTTTATTAGGTATTTTCCT
CGTTTACATTTTCAATGCTATCCCAAAAGTCTGTCATACCCACCCCCGCC
AATCCCCTACCCACCCAATCCCCCGTTTTGGCCCTGGCGTTCCCCTGTAC
TGGGGCATATACAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGG
CAGACTAGACCATTCTTTGTATACATATGCAGCTAGAGTCAAGAGCTCCG
GGGTATTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGTTCCC
TTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCCAAGTGAC
CCATCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCG
GCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGTAAAATGGT
GCTAGTGTATGCAATGGTGTCAGCGTTTGGGAACTGATTATGGGATGGAT
CCGTGCATATGGCAATCATTAAAAGGGGCATCCTTTCGTCACAGGATTTA
TTTTTTGCTTCCGGAAATCACCTCCAAGTGTGCTCTTGTGCCATTTTTTT
TAAAGGTGGACAACTGTCCTACCTTGGTTTTTTTCTCTTTTACACATTTT
TCG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAACAAAGTTTGAAATGGTCTTAAATAAA
TTTCTCCTATTTTGTAAGGAGAAAATTCATACATATATTCATACAAAGAA
AGATTCTTATGGGCATGTCAGTCAACTCCCTAAAACACCAAAAATTCTCT
ACATCTAAAAAATTGGAATGCAAGGTTCAGTCCTTTATGCAGATATCAAC
AACACAACAACACATTAGTCTTTTTAATATGCAAGTTTGACTTTGCTCCA
ATAAGAGAAAAATGTATGTAGAAAAGTATTATTTCAAGATAATTTCTTTA
CTATTTATTATGAGTAAATGGTTAAGCTAACATACACACACACACACACA
CACACACACACACACACACACACATATCCATATATATCTATAGTCAACTA
ATTAGCCTGTATAGAGGACAGGCTTCTTATTCTAATTGTGACATGAGTTC
TGTTGGCACAAATGCATAAAACACCAAGAAAAATCTTCAAATGCTCAACT
TATTTTATGTCAATTATAGNANATATTAGGTGTCAACAATAAATAAGCTT
ACATAAAGCATCTAAATGACAAAATTATATGTTCTTTTGAAACCTACCCA
GNTGATAAGGCATTATGTGTTATTTAAGTTTGCATTGCTGTGAAAAAATA
TCTGAAAAAAACTAGCTGAAGAAGAAAAATATGTTTTGGCTCATTGTTTC

Query= MSMg01no454_d20.g1 MSMg01no454_d20.g1 CHROMAT_FILE:
MSMg01no454_d20.g1 PHD_FILE: MSMg01no454_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:22 2005
         (500 letters)



>mm_chr6_62661864_62662763
          Length = 900

 Score =  934 bits (483), Expect = 0.0
 Identities = 495/499 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataacaaagtttgaaatggtcttaaataaatttctcctattttgtaaggagaaaattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataacaaagtttgaaatggtcttaaataaatttctcctattttgtaaggagaaaattcat 260

                                                                       
Query: 61  acatatattcatacaaagaaagattcttatgggcatgtcagtcaactccctaaaacacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatattcatacaaagaaagattcttatgggcatgtcagtcaactccctaaaacacca 320

                                                                       
Query: 121 aaaattctctacatctaaaaaattggaatgcaaggttcagtcctttatgcagatatcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aaaattctctacatctaaaaaattggaatgcaaggttcagtcctttatgcatatatcaac 380

                                                                       
Query: 181 aacacaacaacacattagtctttttaatatgcaagtttgactttgctccaataagagaaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 aacacaacaacacattagtctttttaatatgcaagtttggctttgctccaataagagaaa 440

                                                                       
Query: 241 aatgtatgtagaaaagtattatttcaagataatttctttactatttattatgagtaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aatgtatgtagaaaagtattatttcaagataatttctttactatttattttgagtaaatg 500

                                                                       
Query: 301 gttaagctaacatacacacacacacacacacacacacacacacacacacacacatatcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttaagctaacatacacacacacacacacacacacacacacacacacacacacatatcca 560

                                                                       
Query: 361 tatatatctatagtcaactaattagcctgtatagaggacaggcttcttattctaattgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatatctatagtcaactaattagcctgtatagaggacaggcttcttattctaattgtg 620

                                                                       
Query: 421 acatgagttctgttggcacaaatgcataaaacaccaagaaaaatcttcaaatgctcaact 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatgagttctgtgggcacaaatgcataaaacaccaagaaaaatcttcaaatgctcaact 680

                              
Query: 481 tattttatgtcaattatag 499
           |||||||||||||||||||
Sbjct: 681 tattttatgtcaattatag 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)