BAC Information

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BAC

Clone NameMSMg01-457L04
Chromosome6 (Build37)
Map Location 87,371,705 - 87,371,946
singlet/doubletsinglet
Overlap genenone
Upstream geneTia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik
Downstream geneBmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L04.T7 (MSMg01no457_l04.b1)MSMg01-457L04.TJ (MSMg01no457_l04.g1)
ACCAG543702AG543703
length7871,150
length of high quality
(start - end)
242 (79 - 320)---
definitionCHROMAT_FILE: MSMg01no457_l04.b1 PHD_FILE: MSMg01no457_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:00 2005CHROMAT_FILE: MSMg01no457_l04.g1 PHD_FILE: MSMg01no457_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAATCC
GCGGAATTCCCATAAGACTGCACTGAACAGTATTCCTAAACACCGTCTAA
AGAGAAACAGCCAGAAATGGAACACTGATGGTTCCAACGGCACACTACCA
AACAAATAGCATATCAACAACTGATATACTGAATCACAACTGGTATATTT
ACTGACCGCAGAGCACCCTCTGGGTACCAGCCTCCTTTCTGGGTTCCAGG
GAAATGCCTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGTGGATTTCTG
AGTTCAAGGCCAGCCTGATCTACTTTTTTTTTTTCCAGGACAGCCAGAGC
TATACAGAGAAAGCCTGTCTCGAAAAACCATACGGAAAGAACGACGGAGA
GAAAGCAAGACAGAAAGAAAGAAAGAAAGAAAGAATGATCGATTGATAGA
AAGAAAGATAGAAAGAAAGAAAGAAAGAAAGAAAGAACGACATAATTATA
GATTGATTGAACGATTGACTGATTGAAACTTGAACGTATCACACTTTCTG
TCCTTCATTCTGTCTGTTTTGCATTTGAAATTATTGTCCATTCTTTGTCC
TTATTCATGTGCATATTTGAATGTTCTTTCTCAATCTTTGCCCACTTCAT
GCCATCTGATAAATTCCCATTTTCTTTGCCGTTTTGTTCTATTATCTACT
TGTCTCGTACTTATTCTGGCTAACTCCTATTCTCTATCTCTCTTTTAACT
TTCCTCTCTCCTGATCCTCTCCTTTTATCTCTTTTCT
TAAAAGAAGAGAGAAGGTGCTTTTCTCGTGGATGTTTGTGGGGCGGGAGT
CCCTTCTGGGTGAGCTGTGTTGATTACTCACATCTCATACACGATTACAA
AAACACGCAAGCGCACCATATTTACGTACATCTGGATGTGCCGCACGTCT
CAGCCATCGGAGTGCGACTGCACACGAATCGCGCACGTCTCTATGAGCGG
TATGAAGCGAGCGATGGTGAGCGAGCATCATGACCACAACGACCGTCCGG
CCCCCACGCTACCCGAATGCCGCGCGATTAGGTGTGAAGTNCGCACGACT
TTTAGCCTCATCTATCCTGTTTCCATTATTATATCAAGTAATCAATATTA
TAACATCGATATTAACATAAGAGGATAGTAATAGGTGAGAGATAGATTAT
GTTATATGCTCTTGTTTGGGAAATATATGATATATTGTGTGTATGACTTA
CCACCTCAGTTCTAACTCTGTCAGCCCGCTCGTGAGTAGTCGATGTCCCG
TTGTTTCTACATAAGCACGCCGCCATACTCTCTGATAGTATCGTGGACAA
TGTCTAAGAGCTCGAGACGAACCCCGGACACGAATGTGTCGCTACGATAG
AGCCGTGCTGAACTCTACTGGTAGAGCGATATCCTTAAACTCCATGTGTA
GATAGAATCAATGACCACGTTTAAGACTTCTCATAGAAACACTGTGTTGT
GAAATAATGAGTAGGTGATTATGTTTACGGTTATCACGGTGTAGACACCA
TGTTATCGAGAGCATATGATGACGAAATATGAGTATACGGTGCTGACGTA
TGTAGTCTTAAGAGTATCCCTACCTGTTTTCCTAACACCATTATGTTATA
AATAAACAATAACTAGTGGATCTCGGTAATAAGTGTTACCGGATATATGT
TCACTCATAACTTTTATTATAGACAATCTAGACTATATTAACACAATCAT
TATGTATCTTGTTAGAGCGTCAACCGACACTCTCGTGGATGGATTAGTAG
CCCTAATCTCGCTCTTAGTATTCGCTGTTTAAGTGTGCTATCGTGACAAG
AGGACTATCATGCATGAATCAAGGCTCCAGCACAGATATGCCGAATCGTG
TAACAANAATAAACTCGACTAGAGCGAACAGACCCATCATATAACTACGC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l04.b1 MSMg01no457_l04.b1 CHROMAT_FILE:
MSMg01no457_l04.b1 PHD_FILE: MSMg01no457_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:00 2005
         (242 letters)



>mm_chr6_87371505_87372146
          Length = 642

 Score =  422 bits (218), Expect = e-122
 Identities = 236/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattcctaaacaccgtctaaagagaaacagccagaaatggaacactgatggttccaac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattcctaaacactgtctaaagagaaacagccagaaatggaacactgatggttccaac 260

                                                                       
Query: 61  ggcacactaccaaacaaatagcatatcaacaactgatatactgaatcacaactggtatat 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||
Sbjct: 261 ggcacactaccaaacaaatagcatatgaacaactgatatactgaatcacaactcttatat 320

                                                                       
Query: 121 ttactgaccgcagagcaccctctgggtaccagcctcctttctgggttccagggaaatgcc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactgaccgcagagcactctctgggtaccagcctcctttctgggttccagggaaatgcc 380

                                                                       
Query: 181 tttaatcccagcactcaggaggcagaagcaggtggatttctgagttcaaggccagcctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tttaatcccagcactcaggaggcagaagcaggtggatttctgagttcgaggccagcctga 440

             
Query: 241 tc 242
           ||
Sbjct: 441 tc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)