Query= MSMg01no458_b09.b1 MSMg01no458_b09.b1 CHROMAT_FILE:
MSMg01no458_b09.b1 PHD_FILE: MSMg01no458_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:34 2005
(542 letters)
>mm_chr6_149297569_149298510
Length = 942
Score = 936 bits (484), Expect = 0.0
Identities = 512/526 (97%), Gaps = 9/526 (1%)
Strand = Plus / Minus
Query: 1 cagtagaattgggtccctgtattcaggaacttgttcaataaatgttctttgcatttgcat 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 519 cagtagaattgggtcc-------caggaacttgttcaataaatgttctttgcatttgcat 467
Query: 61 actatttgagtc--gggtttcattcagcaattcttgagcagtcctggccaacaactcata 118
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actatttgagtcttgggtttcattcagcaattcttgagcagtcctggccaacaactcata 407
Query: 119 aaagagtgtctattgtctagtattggagtttgttaggtgagcaccttcaacctagatgag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaagagtgtctattgtctagtattggagtttgttaggtgagcaccttcaacctagatgag 347
Query: 179 aaaagttaatttaaatatacaggattataatgtattatagggtttcttaggtaaatagtt 238
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 346 aaaagttaatttaaatatacaggattataatgcattatagggtttcttaggtaaatagtt 287
Query: 239 aatagtataatttcttgtgtctttttcagatacccttatagttacttcacccatccccct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 286 aatagtataatttcttgtgtctttttcagatacccttatagttacttcacccatctccct 227
Query: 299 ctttcttctatatttacctccctccctctctctaaagaaccctacctttcccatttcccc 358
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 226 ctttcttctatatttacctccctccctctctctaaagagccctacctttcccatttcccc 167
Query: 359 tatcagataacttgtatcttgttatttccctttgccctctttcccccttcttctgtattt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tatcagataacttgtatcttgttatttccctttgccctctttcccccttcttctgtattt 107
Query: 419 accttctttccctttcccattttcctggttatatcacttgtgccctgctagtctctctcc 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 accttccttccctttcccattttcctggttatatcacttgtgccctgctagtctctctcc 47
Query: 479 cactcacccacatcctagcaacagtcccatttttattgcttagatt 524
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 46 cactcactcacatcctagcaacagtcccatttttattgcttagatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_b09.g1 MSMg01no458_b09.g1 CHROMAT_FILE:
MSMg01no458_b09.g1 PHD_FILE: MSMg01no458_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:34 2005
(330 letters)
>mm_chr6_149125619_149126348
Length = 730
Score = 638 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus
Query: 1 cagaattagtcagtgatcacttgactagaactacttaattaggtatatgtcttactatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaattagtcagtgatcacttgactagaactacttaattaggtatatgtcttactatcc 260
Query: 61 tgccttaattctttatctacttaagcctaaagcttgtgtcgatacctcaacaatgaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccttaattctttatctacttaagcctaaagcttgtgtcgatacctcaacaatgaattt 320
Query: 121 aggatcatcagacctcttcacctgctccacttgcaaatgtacactgatttaatctctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatcatcagacctcttcacctgctccacttgcaaatgtacactgatttaatctctttt 380
Query: 181 ctttggttttcatcattattcatttccttagttggtaatttggtgtgggtggcaaattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttggttttcatcattattcatttccttagttggtaatttggtgtgggtggcaaattct 440
Query: 241 agatttctagatttctagagctgggttattgatctagcactccaattctattgggggtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatttctagatttctagagctgggttattgatctagcactccaattctattgggggtcc 500
Query: 301 tatcctggggaaccattctagagcctcccc 330
||||||||||||||||||||||||||||||
Sbjct: 501 tatcctggggaaccattctagagcctcccc 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
