BAC Information

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BAC

Clone NameMSMg01-459B13
Chromosome6 (Build37)
Map Location 51,422,010 - 51,583,225
singlet/doubletdoublet
Overlap geneCbx3, Snx10, LOC100041820
Upstream geneCycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877, EG625167, Nfe2l3, Hnrpa2b1
Downstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459B13.T7 (MSMg01no459_b13.b1)MSMg01-459B13.TJ (MSMg01no459_b13.g1)
ACCAG544772AG544773
length788767
length of high quality
(start - end)		429 (63 - 491)420 (71 - 490)
definitionCHROMAT_FILE: MSMg01no459_b13.b1 PHD_FILE: MSMg01no459_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:53 2005CHROMAT_FILE: MSMg01no459_b13.g1 PHD_FILE: MSMg01no459_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,422,010 - 51,422,438)(51,582,806 - 51,583,225)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGAATTGTCAGAGCTACACAGAAAAACCCTCTCTGGGCGTGTGGGTG
GGGGAGCTAGAACCTGTGGTGGACATGGTTGTGCCTTCCTTTAATCCCAT
CATAAGTGGGTGAATTGCTGTTAGAAGCCAGCCTACCTAAGTCCTTGTAT
TTACCAGCATTCTAAAGAAAAAGGAATTAACACTAAGTAAGGCTTTTCTT
AAGGAGGATCACAATACATTTTTTTGAAAAAGCGTTGTACAGTTTTTGCT
GGATGCTTTTGAGGTAAAAAATGCATGTTTGTGGGTTATAAAACAGCTCA
ATCTTCAGAGCCCAAGGAAAAGTGGAAAGAAAAAACAAGTTTCTACCAGA
GTGTGCCTTGATTTCCACACAGGAGCTCCATCATATTGTTAATGAGCTGA
ATGGGGGAAGAGTCATGGACAGCTCTATAAAAGTCTTGTGGGTTGGCATG
ATTGCCCTGGAAGCTGTGCTGTTCTGGAGACACTGAGCATTCATTAGGGC
ACCGAGAGTGAAGTAGTAAAAAGTTCTCGTTGCCTTGAGCAATAATTATA
TACTGGTCTAGGATGGATCTAAGACCGTTAGAACCACTTCTGGTTCTTTT
TTCGCAATTTTTGACGGTGGCTAAATTCCCGGTAAGTTTTTTTTGGGCTT
CCATTACTCAAATATAATTTACTTTTTCCCGCGGTTTTTTTACATATATC
ATAATTGTTTCGCCGTCGCCTACGTGCCACCCCTCCTT

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAGACAGGCGAGAGGTCAATTGTTTTCC
CTACCCTCTCAGAATGGAGGAGACCAAGTGTCTCTCGGCTCCACACAGAG
CCCAGGCCCCTGGTAACTATAAGGATGATAAAGCAGGGTGTAGCTCACAT
GCCCGTGGTAGGCCACCAGCCTTAGCAAAGTGGCAAAGCCCAAGAACCAT
GAATGTAGAGAGTGTTTCCATTCATTGCCCAAGTCAGACACATCCTGACC
TCTAACAGGACAATTTATGAAACCAGGCAATGCATTTCTTCTGCCTATTG
TGGCAAAGTACTAACAGTTTCTAAACAAATGACATTAGTTAAGTCAACTA
AGTTTGAGCCTAAATAAAAACGCTCATGTTAGCTCAGAGCTGGAGACATA
TATTCAATCTACTATACTTAACTCAGCGGTAAACAGGTTAAAATGTCTAT
CCAAATACTTCGAATCAAACCATTGCAAACTTTTTGAGTGGAGAAGTGAG
CACTTTGTTGATCACCCCTTCTATTTAAAAATTGAGGGTCATCAAAAATT
TTTTCCTGTCTGTCCCGGGGATTTTGTTAAAAAATAATCTCGTGTCCCTT
GTTATTTTTTCCTCTCCCAAATATCGTAGGACCGCCACTCTCTGCCCGCT
TATTCCCGTTCATTATAGACCCTGTTCCCGCTCATTTGATTTTCTTCCCT
TATCCTCTTTTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_b13.b1 MSMg01no459_b13.b1 CHROMAT_FILE:
MSMg01no459_b13.b1 PHD_FILE: MSMg01no459_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:53 2005
         (429 letters)



>mm_chr6_51421810_51422638
          Length = 829

 Score =  822 bits (425), Expect = 0.0
 Identities = 428/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagctacacagaaaaaccctctctgggcgtgtgggtgggggagctagaacctgtggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagctacacagaaaaaccctctctgggcgtgtgggtgggggagctagaacctgtggtgg 260

                                                                       
Query: 61  acatggttgtgccttcctttaatcccatcataagtgggtgaattgctgttagaagccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggttgtgccttcctttaatcccatcataagtgggtgaattgctgttagaagccagc 320

                                                                       
Query: 121 ctacctaagtccttgtatttaccagcattctaaagaaaaaggaattaacactaagtaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacctaagtccttgtatttaccagcattctaaagaaaaaggaattaacactaagtaagg 380

                                                                       
Query: 181 cttttcttaaggaggatcacaatacatttttttgaaaaagcgttgtacagtttttgctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttcttaaggaggatcacaatacatttttttgaaaaagcgttgtacagtttttgctgg 440

                                                                       
Query: 241 atgcttttgaggtaaaaaatgcatgtttgtgggttataaaacagctcaatcttcagagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcttttgaggtaaaaaatgcatgtttgtgggttataaaacagctcaatcttcagagcc 500

                                                                       
Query: 301 caaggaaaagtggaaagaaaaaacaagtttctaccagagtgtgccttgatttccacacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaggaaaagtggaaagaaaaaacaagtttctaccagagtgtgccttgatttccacacag 560

                                                                       
Query: 361 gagctccatcatattgttaatgagctgaatgggggaagagtcatggacagctctataaaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gagctccatcatattgttaatgagctgaatgggggaagagtcgtggacagctctataaaa 620

                    
Query: 421 gtcttgtgg 429
           |||||||||
Sbjct: 621 gtcttgtgg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_b13.g1 MSMg01no459_b13.g1 CHROMAT_FILE:
MSMg01no459_b13.g1 PHD_FILE: MSMg01no459_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:53 2005
         (420 letters)



>mm_chr6_51582606_51583425
          Length = 820

 Score =  758 bits (392), Expect = 0.0
 Identities = 413/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagacaggcgagaggtcaattgttttccctaccctctcagaatggaggagaccaagtg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagagacaggcgaaaggtcaattgttttccctaccctctcagaatggaggagaccaagtg 561

                                                                       
Query: 61  tctctcggctccacacagagcccaggcccctggtaactataaggatgataaagcagggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctctcggctccacacagagcccaggcccctggtaactataaggatgataaagcagggtg 501

                                                                       
Query: 121 tagctcacatgcccgtggtaggccaccagccttagcaaagtggcaaagcccaagaaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 tagctcacatgcccgtggtaggccaccagccttagcaaagtggcaaagccccagaaccat 441

                                                                       
Query: 181 gaatgtagagagtgtttccattcattgcccaagtcagacacatcctgacctctaacagga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 gaatgtagagagtgtttccattcattgcccaagtcagacacatcctgacctctagcagga 381

                                                                       
Query: 241 caatttatgaaaccaggcaatgcatttcttctgcctattgtggcaaagtactaacagttt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caattcatgaaaccaggcaatgcatttcttctgcctattgtggcaaagtactaacagttt 321

                                                                       
Query: 301 ctaaacaaatgacattagttaagtcaactaagtttgagcctaaataaaaacgctcatgtt 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 320 ctaaacaaatgacattagttaagtcaactaaatttgagcctaaataaaaacactcatgtt 261

                                                                       
Query: 361 agctcagagctggagacatatattcaatctactatacttaactcagcggtaaacaggtta 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 260 agctcagagctggagacatatattcaatctactatacttaactcagtggtaaacaggtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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