BAC Information

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BAC

Clone NameMSMg01-459C20
Chromosome6 (Build37)
Map Location 101,351,731 - 101,352,128
singlet/doubletsinglet
Overlap genenone
Upstream geneShq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459C20.T7 (MSMg01no459_c20.b1)MSMg01-459C20.TJ (MSMg01no459_c20.g1)
ACCAG544833AG544834
length769774
length of high quality
(start - end)		481 (62 - 542)392 (79 - 470)
definitionCHROMAT_FILE: MSMg01no459_c20.b1 PHD_FILE: MSMg01no459_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:00 2005CHROMAT_FILE: MSMg01no459_c20.g1 PHD_FILE: MSMg01no459_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CTGTATTTCCTCTTGTTTGGTGACAGGCTCTTTCAGTGTAGCCCAGGCTG
GTATAGCACACAGTTCTTCAACCTCAGCCTCCTAATTATATGTGTGTACC
ACAAGGCCCATATTATACATGTATGTGTGTGAGCATGGGTATGGCAATCC
ATGGTTGACATTAGGTATCCCTCATTCACTTTCCACTCTATTTAATAGTG
CATGGTCTCTAGATTCTGGAGCTTGTCAGTCCCTGATCACTTAACTAGTC
AGCTTCTCTCAGAATTCCCCTGTCTCTACCTCTTCTGTGTTTTGATTACA
GGTAGGCTACCATATCTACCCAGCTCTTATGTGAGCTCTGAGGACCCAAA
ATTTGATCTTAGTGTTTATATGTCGAATCTTTATCTCTGAGACATCTCTG
CATCCTGAATTCTAGATTTGTAATACTGGATCTAGAAGGTAGAGTGTGGA
TGATCCATTTCTATCTTCCTTCCTTCAAAGAAGCAAATGTCTATATCAGA
GCTGTCAAGTGTCCTCTAACCACAACTACCTCTGACTGCCTCCCCTTTAT
TCTGACAAAGATCAGATATAAGATCCTTTCTTAAATCGGTCTACTACTTT
TCCCTTCAAAGACAAGTCCCATTTGCAAGAGATCCTTTATATCCCTTAAA
AAACTTTTTGGGCCTAATATTGCCCAAAAAAGGGGCGGCCTCCTTAACAA
AATCCCCTCCTATCCCTCG

GATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCATGCTCATGATGTTGGA
TCAAGATGATTTTTTTTTAAAATCCAGGCAATGTTTTTATTTCCCTTCTG
CACTACTTTTTAAACACACCTCAGGGCCAGAGGGCCAGATTCCATAATTT
CATCTTTTTTTTTTTTTCACAAGGCAGATGACTATTCTGGAAAGTGGTCC
TCCTTCCTCATTCTCATTTATTATAAATTAAGAGGTAACCAAAACCTGCA
TGAAGTTGCTTTAGATTATTCCCTAGATAAGGTTCAAGTGACTCCCGAGA
GTGACATAGATGAGAAATGGTGTGACCAATTAAAATAGAATGCTCTTGTA
GTGATATGACATCAGGCCATGGTATTCGGAAAGTTCATCAAGACTGGAAT
TTAATGGCAGGGAATGAACGAGGTGAAGAAAAGCACAGGCTGCAGGCTTC
CACAGTGGGAGGAGGCAGTATTTCACAATGCATTTAAAGCTTGACATAAC
GAATGGGCTTGGCGGCTGACCTCCCAATGGCGGGAGAAGATTGAGGGTTA
AAAATTGGCCTTATTTCAGGGCCGGGTTTTGATCACCCCTTTGGGAATAC
TTTTCCCTTCGGGCCAGGCTTCTTTAAAACTGGCATGGTCTGGAAATTGC
TCCTTTTTTTTATTCATACATCTTCCGCCAATGGGGGGGTAGATGAAAAG
TACAATCTTTTTTATCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_c20.g1 MSMg01no459_c20.g1 CHROMAT_FILE:
MSMg01no459_c20.g1 PHD_FILE: MSMg01no459_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:00 2005
         (392 letters)



>mm_chr6_101351531_101352328
          Length = 798

 Score =  708 bits (366), Expect = 0.0
 Identities = 388/398 (97%), Gaps = 6/398 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatgctcatgatgttggatcaagatga-----tttttttttaaaatccaggcaatg 55
           |||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||
Sbjct: 201 aaggcatgctcatgatgttggatcaagatgagttttttttttttttaaatccaggcaatg 260

                                                                       
Query: 56  tttttatttcccttctgcactactttttaaacacacctcagggccagagggccagattcc 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttatttcccttctgcactactttttaaacacacctcagggccagagggccagattcc 320

                                                                       
Query: 116 ataatttcatcttttttttttttt-cacaaggcagatgactattctggaaagtggtcctc 174
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatttcatcttttttttttttttcacaaggcagatgactattctggaaagtggtcctc 380

                                                                       
Query: 175 cttcctcattctcatttattataaattaagaggtaaccaaaacctgcatgaagttgcttt 234
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctcattctcatttattataagttaagaggtaaccaaaacctgcatgaagttgcttt 440

                                                                       
Query: 235 agattattccctagataaggttcaagtgactcccgagagtgacatagatgagaaatggtg 294
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 agattattccctagataagattcaagtgacttccgagagtgacatagatgagaaatggtg 500

                                                                       
Query: 295 tgaccaattaaaatagaatgctcttgtagtgatatgacatcaggccatggtattcggaaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaccaattaaaatagaatgctcttgtagtgatatgacatcaggccatggtattcggaaa 560

                                                 
Query: 355 gttcatcaagactggaatttaatggcagggaatgaacg 392
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcatcaagactggaatttaatggcagggaatgaacg 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 798
Length adjustment: 9
Effective length of query: 383
Effective length of database: 789
Effective search space:   302187
Effective search space used:   302187
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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